View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_high_2 (Length: 978)
Name: NF7710_high_2
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_high_2 |
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| [»] scaffold0028 (2 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 20 - 485
Target Start/End: Original strand, 123899 - 124364
Alignment:
| Q |
20 |
ctccgtgagttgcaagatgtcatgtagtggtagaacaacagcactaccaatgaacctctcaatagatgagtattgtgttagagatgatgaagatgggcta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
123899 |
ctccgtgagttgcaagatgtcatgtagtggtagaacaacagcactaccaatgaacctctcaatagatgagtattgtgttagagatgatgaagatgggcta |
123998 |
T |
|
| Q |
120 |
aacatttgagattgaacacttagttgctgactttgtgacgatcctgcgtcatcaagaggcaacctaaaaccaaatcatcaaagtcaatactttgcttaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
123999 |
aacatttgagattgaacacttagttgctgactttgtgacgatcctgtgtcatcaagaggcaacctaaaaccaaatcatcaaagtcaatactttgcttaat |
124098 |
T |
|
| Q |
220 |
atacttgaatgtgaatatattaatgactaattacccttgtttgaattgaaggacctctggtatttcaggattgataaatagctttgtagcattccatgaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
124099 |
atacttgaatgtgaatatattaatgactaattacccttgtttgaattgaagcacctctggtatttcaggattgataaatagctttgtagcattccatgaa |
124198 |
T |
|
| Q |
320 |
ttagagactccgagttcatatttatctatacaatgccaagttgaattggaatcagccattattaggtgaattattaatggattaagaatgtagtacttaa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
124199 |
ttagagactccgagttcatatttatctatacaatgccaagttgaattggaatcagccattattaggtgaattattaatagattaagaatgtagtacttaa |
124298 |
T |
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| Q |
420 |
tagtggataacctgtggcttccttaatcttagcattgtgcagaagaatgatagttggtccagcctg |
485 |
Q |
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| T |
124299 |
tagtggataacctgtggctttcttaatcttagcattgtgcagaagaatgatagttggtccagcctg |
124364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 554 - 973
Target Start/End: Original strand, 124369 - 124788
Alignment:
| Q |
554 |
ttcccctgtacatatatagaatttttatgatcagtttgttattaaaccacaatgatattatctaaataacataagaataggatcgtactgtaagtctttc |
653 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
124369 |
ttcccctgtacatatatagaatttttatgatcagattgttattaaaccacaatgatattatctaaataacataagaataggatcgtactgtaagtctttc |
124468 |
T |
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| Q |
654 |
atccaaaagttgatttgaattttcctagatccaggcacagtttgagtgtatcctaattcatgaaaggctccaatgacatctatcaagcacatcacaaatt |
753 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
124469 |
atccaaaagttgatttgaattttcctagatcgaggcacagtttgagtgtatcctaattcatgaaaggctccaatgacatctatcaagcacatcacaaatt |
124568 |
T |
|
| Q |
754 |
cgtattaaatacaaaatgcattaaacaaaagcttaattaaaagaatgatgatttaacctataaggacatcgggccttagtacgcccttctttatcatatc |
853 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
124569 |
cgtattaaatacaaaatgcattaaacaaaagcttaattaaaagaatgatgatttaacctataaggacatcgggccttagtacgcccttctttatcatatc |
124668 |
T |
|
| Q |
854 |
aaattccttgaagcagaatggtggtttgggtatgtcatgtttgtcgatgctatcaatagttgttgcagcattaaacaccagcctaaacttatgattagtt |
953 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
124669 |
aaattccttgaagcagaatggtggtttgggtatgtcatgtttatcgatgctatcgatagttgttgcaacattaaacaccagcctaaacttatgattagtt |
124768 |
T |
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| Q |
954 |
gctttgatgtccatctcatt |
973 |
Q |
| |
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||||||||| ||||||||| |
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| T |
124769 |
gctttgatggtcatctcatt |
124788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 9e-48; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 39 - 188
Target Start/End: Original strand, 23697779 - 23697928
Alignment:
| Q |
39 |
tcatgtagtggtagaacaacagcactaccaatgaacctctcaatagatgagtattgtgttagagatgatgaagatgggctaaacatttgagattgaacac |
138 |
Q |
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|||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||| |
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| T |
23697779 |
tcatttagtggtagaacaacaacactaccaatgaatctctcaatagatgagtattgcgttagagatgacgaagatgggataaacatctgagattgaacac |
23697878 |
T |
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| Q |
139 |
ttagttgctgactttgtgacgatcctgcgtcatcaagaggcaacctaaaa |
188 |
Q |
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||||||||||||| |||||| || || ||||||||||||||| |||||| |
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| T |
23697879 |
ttagttgctgactctgtgacaatgttgggtcatcaagaggcaaactaaaa |
23697928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 647 - 739
Target Start/End: Original strand, 23699617 - 23699709
Alignment:
| Q |
647 |
gtctttcatccaaaagttgatttgaattttcctagatccaggcacagtttgagtgtatcctaattcatgaaaggctccaatgacatctatcaa |
739 |
Q |
| |
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|||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23699617 |
gtctttcatccagaagttgatttgtattttcctagatccaggtacagtttgagtgtatcctaattcatgaaatactccaatgacatctatcaa |
23699709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 259 - 350
Target Start/End: Original strand, 23698015 - 23698106
Alignment:
| Q |
259 |
tttgaattgaaggacctctggtatttcaggattgataaatagctttgtagcattccatgaattagagactccgagttcatatttatctatac |
350 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| || |||||||||| |
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| T |
23698015 |
tttgaattgaaggacctcagggatttcaggattgataaatagctttgtagcattccatgcattagagactctgagttcgtacttatctatac |
23698106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 804 - 898
Target Start/End: Original strand, 23699791 - 23699885
Alignment:
| Q |
804 |
atttaacctataaggacatcgggccttagtacgcccttctttatcatatcaaattccttgaagcagaatggtggtttgggtatgtcatgtttgtc |
898 |
Q |
| |
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|||| ||||||||||||||| ||||||| || |||||||| ||| |||||| |||||||| | ||||| |||| | ||||||||||||||||| |
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| T |
23699791 |
attttacctataaggacatctggccttactattcccttcttgatctcatcaaactccttgaaactgaatgatggtctaggtatgtcatgtttgtc |
23699885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 566
Target Start/End: Original strand, 23699478 - 23699539
Alignment:
| Q |
505 |
tttaggaattggataccaaagtctttccacagtgtacaactgaataatgttcccctgtacat |
566 |
Q |
| |
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||||||||||| | |||| |||||| |||||||||||| | |||||||||||||||||||| |
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| T |
23699478 |
tttaggaattgaagaccatagtcttcccacagtgtacagtttaataatgttcccctgtacat |
23699539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 3e-32; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 638 - 745
Target Start/End: Original strand, 22079326 - 22079433
Alignment:
| Q |
638 |
gtactgtaagtctttcatccaaaagttgatttgaattttcctagatccaggcacagtttgagtgtatcctaattcatgaaaggctccaatgacatctatc |
737 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22079326 |
gtactttaagtctttcatccaaaagttgatttgtattttcctagatccagcttgagtctgattgtatcctaattcatgaaaggctccaatgacatctatc |
22079425 |
T |
|
| Q |
738 |
aagcacat |
745 |
Q |
| |
|
|| ||||| |
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|
| T |
22079426 |
aaacacat |
22079433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 249 - 354
Target Start/End: Original strand, 22078940 - 22079045
Alignment:
| Q |
249 |
attacccttgtttgaattgaaggacctctggtatttcaggattgataaatagctttgtagcattccatgaattagagactccgagttcatatttatctat |
348 |
Q |
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|||||||||||||||||| ||||||||| | | ||||||||||||||| ||||| ||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
22078940 |
attacccttgtttgaattcaaggacctcgaggaattcaggattgataaacagcttggtagcattccatgcattagagaccccgagttcatatttatctat |
22079039 |
T |
|
| Q |
349 |
acaatg |
354 |
Q |
| |
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|||||| |
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| T |
22079040 |
acaatg |
22079045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 426 - 480
Target Start/End: Original strand, 22079119 - 22079173
Alignment:
| Q |
426 |
ataacctgtggcttccttaatcttagcattgtgcagaagaatgatagttggtcca |
480 |
Q |
| |
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||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22079119 |
ataacatgtggcttccttaatcttagcattgtgaagaagaatgatagttggtcca |
22079173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 22078709 - 22078755
Alignment:
| Q |
45 |
agtggtagaacaacagcactaccaatgaacctctcaatagatgagta |
91 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22078709 |
agtggtagaacaacagcactaccaatgaacctttcaatagatgagta |
22078755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 809 - 958
Target Start/End: Original strand, 22079490 - 22079639
Alignment:
| Q |
809 |
acctataaggacatcgggccttagtacgcccttctttatcatatcaaattccttgaagcagaatggtggtttgggtatgtcatgtttgtcgatgctatca |
908 |
Q |
| |
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|||||| |||||||| ||||||||| | |||||||| ||| |||||| ||||| ||| ||| | ||||||||| |||||||| ||||| ||| | ||| |
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| T |
22079490 |
acctattaggacatctggccttagtgctcccttcttgatctcatcaaagtccttaaagttgaaagatggtttgggaatgtcatgcttgtcaatgttgtca |
22079589 |
T |
|
| Q |
909 |
atagttgttgcagcattaaacaccagcctaaacttatgattagttgcttt |
958 |
Q |
| |
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| | ||||| || |||||||||||| || ||| ||||| ||||||||| |
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| T |
22079590 |
acacttgttccaccattaaacaccaaccaaaatggatgatcagttgcttt |
22079639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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