View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7710_high_23 (Length: 288)

Name: NF7710_high_23
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7710_high_23
NF7710_high_23
[»] chr3 (7 HSPs)
chr3 (48-260)||(24595143-24595360)
chr3 (39-250)||(51308735-51308955)
chr3 (39-252)||(20871255-20871484)
chr3 (39-165)||(20868714-20868841)
chr3 (31-165)||(27462145-27462279)
chr3 (39-165)||(51306368-51306493)
chr3 (128-165)||(35610835-35610872)
[»] chr4 (4 HSPs)
chr4 (33-260)||(55849419-55849656)
chr4 (79-165)||(55852052-55852137)
chr4 (199-247)||(15040083-15040130)
chr4 (199-247)||(15114294-15114341)
[»] chr1 (5 HSPs)
chr1 (59-252)||(20225517-20225719)
chr1 (194-260)||(12685020-12685086)
chr1 (61-153)||(20226850-20226942)
chr1 (195-247)||(16385488-16385540)
chr1 (39-165)||(16385601-16385725)
[»] chr2 (1 HSPs)
chr2 (33-164)||(26608008-26608138)
[»] chr8 (14 HSPs)
chr8 (171-260)||(4678009-4678098)
chr8 (39-165)||(12062804-12062931)
chr8 (33-165)||(35416089-35416221)
chr8 (194-260)||(19472664-19472730)
chr8 (194-260)||(19543589-19543655)
chr8 (194-260)||(19589041-19589107)
chr8 (194-255)||(3785972-3786033)
chr8 (33-165)||(31909100-31909229)
chr8 (45-165)||(3785802-3785920)
chr8 (39-165)||(369301-369425)
chr8 (39-123)||(3788506-3788591)
chr8 (39-112)||(19472489-19472563)
chr8 (39-112)||(19543414-19543488)
chr8 (39-112)||(19589208-19589282)
[»] chr6 (4 HSPs)
chr6 (40-165)||(9664639-9664764)
chr6 (33-165)||(787305-787437)
chr6 (40-158)||(3074956-3075075)
chr6 (33-156)||(21146819-21146941)
[»] chr7 (2 HSPs)
chr7 (30-165)||(2577018-2577151)
chr7 (194-252)||(26389102-26389160)
[»] chr5 (2 HSPs)
chr5 (62-141)||(27172855-27172934)
chr5 (39-163)||(18587369-18587499)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 7e-89; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 48 - 260
Target Start/End: Complemental strand, 24595360 - 24595143
Alignment:
Q  48 catctatgaagatagagagaaaagcttagaaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatgagtcaatcatg 147  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  24595360 catccatgaagatagagagaaaagcttagaaactattgtattgatgatagttgaaaatgatacaagaatgaaaaagattagtacaaatgagtcaaccatg 24595261  T
Q  148 tgacttatatagta-----actagtgtcctaactataacattattcttaatagcctccctcaaactcaaggtaagagaactcttagcttaagtttgaatt 242  Q
    ||||||||||||||     |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  24595260 tgacttatatagtaactaaactagtgtcctaactatatcattattcttaatagcctccctcaaactcaaggtaagataactcttagcttgagtttgaatt 24595161  T
Q  243 acaaagctaacaccaaac 260  Q
    |||||||||||| |||||    
T  24595160 acaaagctaacagcaaac 24595143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 39 - 250
Target Start/End: Complemental strand, 51308955 - 51308735
Alignment:
Q  39 gaaacatggcatctatgaagatagagagaaaa-gcttagaaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatga 137  Q
    |||||||| |||| ||||| |||||||||||| ||||| ||| |||| ||||||| |||||||||| |||||||||||| ||| ||| ||||||||||||    
T  51308955 gaaacatgacatccatgaaaatagagagaaaaagcttataaattattgtattgataatagttgaaa-tgatacaagaataaaagagattagtacaaatga 51308857  T
Q  138 gtcaatcatgtgacttatatagta-----actagtgtcc----taactataacattattcttaatagcctccctcaaactcaaggtaagagaactcttag 228  Q
    ||||| ||||||||||||||||||     ||||| ||||    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  51308856 gtcaaccatgtgacttatatagtaactacactagcgtcctaattaactatatcattattcttaatagcctccctcaaactcaaggtaagagaactcttaa 51308757  T
Q  229 cttaagtttgaattacaaagct 250  Q
    ||| |||||||| |||||||||    
T  51308756 cttgagtttgaactacaaagct 51308735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 39 - 252
Target Start/End: Complemental strand, 20871484 - 20871255
Alignment:
Q  39 gaaacatggcatctatgaagatagagagaaaagcttagaaa------ctattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtaca 132  Q
    |||||||| |||| ||||| | |||||||||||||||||||       |||| |||||||||||||||||||| ||||||||||||||||||   |||||    
T  20871484 gaaacatgacatccatgaaaagagagagaaaagcttagaaaactattgtattgtattgatgatagttgaaaataatacaagaatgaaaaagataggtaca 20871385  T
Q  133 aatgagtcaatcatgtgacttatatagt------aactagtgtc----ctaactataacattattcttaatagcctccctcaaactcaaggtaagagaac 222  Q
    |||||||||| |||||||||||||||||      ||||||| ||    ||||||||| ||| |||||||||| |||||||||||||||||||||||||||    
T  20871384 aatgagtcaaccatgtgacttatatagtaactaaaactagtatcctaactaactatatcatcattcttaataccctccctcaaactcaaggtaagagaac 20871285  T
Q  223 tcttagcttaagtttgaattacaaagctaa 252  Q
    ||||| ||| |||||| |||||||||||||    
T  20871284 tcttaacttgagtttggattacaaagctaa 20871255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 20868841 - 20868714
Alignment:
Q  39 gaaacatggcatctatgaagatagagagaaaagcttagaaa-ctattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatga 137  Q
    ||||||||||||| ||||| | ||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||   |||||||| |    
T  20868841 gaaacatggcatccatgaaaagagagagaaaagcttagaaaactattgtattgatgatagttgaacataatacaagaatgaaaaagataggtacaaataa 20868742  T
Q  138 gtcaatcatgtgacttatatagtaacta 165  Q
    ||||| ||||||||||||||||||||||    
T  20868741 gtcaaccatgtgacttatatagtaacta 20868714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 165
Target Start/End: Complemental strand, 27462279 - 27462145
Alignment:
Q  31 actgttacgaaacatggcatctatgaagatagagagaaaagcttagaaa-ctattatattgatgatagttgaaaatgatacaagaatgaaaaagactagt 129  Q
    |||||||  |||||||||||| ||| | |||||||||||||||| |||| ||||| ||||||| |||||||||| ||||||||||||||||||||   ||    
T  27462279 actgttagtaaacatggcatccatggatatagagagaaaagcttggaaaactattgtattgattatagttgaaa-tgatacaagaatgaaaaagataggt 27462181  T
Q  130 acaaatgagtcaatcatgtgacttatatagtaacta 165  Q
    ||||||||||||| ||| ||||||||||||||||||    
T  27462180 acaaatgagtcaaccatatgacttatatagtaacta 27462145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 51306493 - 51306368
Alignment:
Q  39 gaaacatggcatctatgaagatagagagaaaa-gcttagaaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatga 137  Q
    |||||||| |||| ||||| |||||||||||| ||||||||| |||| ||||||| |||||| |||||||||||| ||| ||| ||| |||||  |||||    
T  51306493 gaaacatgacatccatgaaaatagagagaaaaagcttagaaattattgtattgataatagtt-aaaatgatacaaaaataaaagagattagta-taatga 51306396  T
Q  138 gtcaatcatgtgacttatatagtaacta 165  Q
    ||||| ||| | | ||||||||||||||    
T  51306395 gtcaaccatataagttatatagtaacta 51306368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 35610872 - 35610835
Alignment:
Q  128 gtacaaatgagtcaatcatgtgacttatatagtaacta 165  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  35610872 gtacaaatgagtcaaccttgtgacttatatagtaacta 35610835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 33 - 260
Target Start/End: Original strand, 55849419 - 55849656
Alignment:
Q  33 tgttacgaaacatggcatctatgaagatagagagaaaagcttag--aaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagta 130  Q
    ||||| ||||||||||||| ||| | |||||||||||||||| |  |||||||| |||||||||||||||||| ||||||||||||| ||||||   |||    
T  55849419 tgttaggaaacatggcatccatggatatagagagaaaagcttgggaaaactattgtattgatgatagttgaaa-tgatacaagaatggaaaagataggta 55849517  T
Q  131 caaatgagtcaatcatgtgacttatatagtaact-----agtgtc----ctaactataacattattcttaatagcctccctcaaactcaaggtaagagaa 221  Q
    |||||||||||| |||||||||||||||||||||     ||||||    ||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  55849518 caaatgagtcaaccatgtgacttatatagtaactgaactagtgtcctaactaactatatcattattcttaatagcctccctcaaactcaaggtaagataa 55849617  T
Q  222 ctcttagcttaagtttgaattacaaagctaacaccaaac 260  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  55849618 ctcttagcttgagtttgaattacaaagctaacagcaaac 55849656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 55852052 - 55852137
Alignment:
Q  79 actattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatgagtcaatcatgtgacttatatagtaacta 165  Q
    |||||| |||||||||||||||||| ||||||||||||| ||||||  | |||||||||||||| ||||| | ||||||||||||||    
T  55852052 actattgtattgatgatagttgaaa-tgatacaagaatgtaaaagataactacaaatgagtcaaccatgttagttatatagtaacta 55852137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 15040083 - 15040130
Alignment:
Q  199 ccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaa 247  Q
    ||||||||||||||||||||||| |||| |||| |||||||| ||||||    
T  15040083 ccctcaaactcaaggtaagagaattctt-gcttgagtttgaaatacaaa 15040130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 15114341 - 15114294
Alignment:
Q  199 ccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaa 247  Q
    ||||||||||||||||||||||| |||| |||| |||||||| ||||||    
T  15114341 ccctcaaactcaaggtaagagaattctt-gcttgagtttgaaatacaaa 15114294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 59 - 252
Target Start/End: Original strand, 20225517 - 20225719
Alignment:
Q  59 atagagagaaaagcttagaaa-ctattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatgagtcaatcatgtgacttatat 157  Q
    ||||||||||||||||  ||| ||||| ||||||||||| |||||| ||||||||||||| ||||||   ||||||| ||||||| ||||||||||||||    
T  20225517 atagagagaaaagcttgcaaaactattgtattgatgataattgaaa-tgatacaagaatggaaaagataggtacaaaagagtcaaccatgtgacttatat 20225615  T
Q  158 agtaact-----agtgtc----ctaactataacattattcttaatagcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaag 248  Q
    |||||||     ||||||    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  20225616 agtaactaaactagtgtcctaactaactatatcattattcttaatagcctccctcaaactcaaggtaagagaactcttagattgagtttgaattacaaag 20225715  T
Q  249 ctaa 252  Q
    ||||    
T  20225716 ctaa 20225719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 12685086 - 12685020
Alignment:
Q  194 agcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaacaccaaac 260  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  12685086 agcctccctcaaactcaaggtaagagaactcttaacttgagtttgaattacaaagctaacaccaaac 12685020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 20226850 - 20226942
Alignment:
Q  61 agagagaaaagctt-agaaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatgagtcaatcatgtgactt 153  Q
    ||||||||||| || | |||||||| ||||||||||| |||||| ||||||||||||||||||||   ||||||| ||||||| ||||| ||||    
T  20226850 agagagaaaagtttgaaaaactattgtattgatgataattgaaa-tgatacaagaatgaaaaagataggtacaaaagagtcaaccatgtaactt 20226942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 16385540 - 16385488
Alignment:
Q  195 gcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaa 247  Q
    |||||| ||||||||||||||||| |||| ||| ||| |||||||||||||||    
T  16385540 gcctccatcaaactcaaggtaagataactattaacttgagtttgaattacaaa 16385488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 16385725 - 16385601
Alignment:
Q  39 gaaacatggcatctatgaagatagagag-aaaagcttagaaa-ctattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatg 136  Q
    ||||||||||||| ||||| ||||| || ||||||||| |||  |||| ||||||| ||||  ||||||||||||| ||||||| |||   |||||||||    
T  16385725 gaaacatggcatccatgaaaatagaaagaaaaagcttacaaagttattgtattgattatag-ggaaaatgatacaaaaatgaaagaga--tgtacaaatg 16385629  T
Q  137 agtcaatcatgtgacttatatagtaacta 165  Q
    |||||| | ||||||||||| ||| ||||    
T  16385628 agtcaa-cttgtgacttatacagtgacta 16385601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 26608008 - 26608138
Alignment:
Q  33 tgttacgaaacatggcatctatgaagatagagagaaaagcttagaaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtaca 132  Q
    ||||| |||||||| |||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||   |||||    
T  26608008 tgttaagaaacatgacatccatgaaaatagagagaaaagcttagaaa-tattgtattgatgatagttgaaaatgatacaagaatgaaaaagataggtaca 26608106  T
Q  133 aatgagtcaatcatgtgacttatatagtaact 164  Q
     ||||||||| | |||||||||||||||||||    
T  26608107 gatgagtcaaccttgtgacttatatagtaact 26608138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 4678098 - 4678009
Alignment:
Q  171 ctaactataacattattcttaatagcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaacaccaaac 260  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||    
T  4678098 ctaactatatcattattcttaatagcctccctcaaactcaaggtaagagaactcttagcttgaatttgaattacaaagctaacagcaaac 4678009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 12062931 - 12062804
Alignment:
Q  39 gaaacatggcatctatgaagatagagagaaaagcttag-aaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatga 137  Q
    ||||||||||||| ||||| |||||||||||||||||| |||||||| | |||||||| ||||||||| |||||||||||||| |     ||||||||||    
T  12062931 gaaacatggcatccatgaaaatagagagaaaagcttagaaaactattctcttgatgatggttgaaaataatacaagaatgaaagatgtgggtacaaatga 12062832  T
Q  138 gtcaatcatgtgacttatatagtaacta 165  Q
    ||||| ||||||||||||||||||||||    
T  12062831 gtcaaccatgtgacttatatagtaacta 12062804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 33 - 165
Target Start/End: Original strand, 35416089 - 35416221
Alignment:
Q  33 tgttacgaaacatggcatctatgaagatagagagaaaagctt-agaaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtac 131  Q
    ||||| ||||||||||||| || || |||||||||||||||| | |||||||| |||| ||| ||||||||| |||||||| |||||| ||||  |||||    
T  35416089 tgttaagaaacatggcatccataaaaatagagagaaaagcttgaaaaactattgtattaatggtagttgaaa-tgatacaataatgaagaagataagtac 35416187  T
Q  132 aaatgagtcaatcatgtgacttatatagtaacta 165  Q
    ||||||||||| ||||||||||||||||| ||||    
T  35416188 aaatgagtcaaccatgtgacttatatagtcacta 35416221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 19472664 - 19472730
Alignment:
Q  194 agcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaacaccaaac 260  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  19472664 agcctccctcaaactcaaggtaagagaactcttagcttgagtttgaattacaaagcaaacaccaaac 19472730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 19543589 - 19543655
Alignment:
Q  194 agcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaacaccaaac 260  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  19543589 agcctccctcaaactcaaggtaagagaactcttagcttgagtttgaattacaaagcaaacaccaaac 19543655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 19589107 - 19589041
Alignment:
Q  194 agcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaacaccaaac 260  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  19589107 agcctccctcaaactcaaggtaagagaactcttagcttgagtttgaattacaaagcaaacaccaaac 19589041  T

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Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 3785972 - 3786033
Alignment:
Q  194 agcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaacac 255  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  3785972 agccttcctcaaactcaaggaaagagaactcttagcttgagtttgaattacaaagctaacac 3786033  T

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Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 165
Target Start/End: Original strand, 31909100 - 31909229
Alignment:
Q  33 tgttacgaaacatggcatctatgaagatagagagaaaagcttagaaa-ctattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtac 131  Q
    ||||| |||||||| |||| ||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||| ||||||| ||||||| |||   ||||    
T  31909100 tgttaggaaacatg-catccatgaaaatagagagaaaagcttacaaagctattgtattgatgatagttgaaaa-gatacaa-aatgaaagagagaggtac 31909196  T
Q  132 aaatgagtcaatcatgtgacttatatagtaacta 165  Q
    ||||||||||| | ||||||||||||||| ||||    
T  31909197 aaatgagtcaa-cttgtgacttatatagtgacta 31909229  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 3785802 - 3785920
Alignment:
Q  45 tggcatctatgaagatagagagaa-aagcttag-aaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatgagtcaa 142  Q
    ||||||| ||||| |||||||||| |||||||| ||| |||| ||||||| |||||||||| |||||||||||| ||||||  |  ||||||||||||||    
T  3785802 tggcatccatgaaaatagagagaagaagcttaggaaattattgtattgataatagttgaaa-tgatacaagaataaaaaag--tgatacaaatgagtcaa 3785898  T
Q  143 tcatgtgacttatatagtaacta 165  Q
     | ||||||||||||||| ||||    
T  3785899 -cttgtgacttatatagtgacta 3785920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 369425 - 369301
Alignment:
Q  39 gaaacatggcatctatgaagatagagagaaaagcttagaaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatgag 138  Q
    |||||||| |||| ||||| ||| |||||||| |||| || ||||| ||||||||||||||||||| ||||||| ||| ||| |||   |||||||| ||    
T  369425 gaaacatgacatccatgaaaataaagagaaaaacttacaa-ctattgtattgatgatagttgaaaa-gatacaaaaataaaagagatcggtacaaattag 369328  T
Q  139 tcaatcatgtgacttatatagtaacta 165  Q
     ||| ||| |||||||| |||||||||    
T  369327 ccaaccatatgacttatttagtaacta 369301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 3788506 - 3788591
Alignment:
Q  39 gaaacatggcatctatgaagatagagagaa-aagcttag-aaactattatattgatgatagttgaaaatgatacaagaatgaaaaag 123  Q
    ||||||||||||| ||||| |||||||||| ||| |||| ||| |||| ||||||| ||||||| ||||||||||||||||||||||    
T  3788506 gaaacatggcatccatgaaaatagagagaagaagtttagaaaattattgtattgataatagttg-aaatgatacaagaatgaaaaag 3788591  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 19472489 - 19472563
Alignment:
Q  39 gaaacatggcatctatgaagatagagag-aaaagctt-agaaactattatattgatgatagttgaaaatgatacaa 112  Q
    ||||||||||||| ||||| |||||||| |||||||| ||||| |||||||||||  ||||||| |||||||||||    
T  19472489 gaaacatggcatccatgaaaatagagagaaaaagcttaagaaattattatattgaaaatagttg-aaatgatacaa 19472563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 19543414 - 19543488
Alignment:
Q  39 gaaacatggcatctatgaagatagagag-aaaagctt-agaaactattatattgatgatagttgaaaatgatacaa 112  Q
    ||||||||||||| ||||| |||||||| |||||||| ||||| |||||||||||  ||||||| |||||||||||    
T  19543414 gaaacatggcatccatgaaaatagagagaaaaagcttaagaaattattatattgaaaatagttg-aaatgatacaa 19543488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 19589282 - 19589208
Alignment:
Q  39 gaaacatggcatctatgaagatagagag-aaaagctt-agaaactattatattgatgatagttgaaaatgatacaa 112  Q
    ||||||||||||| ||||| |||||||| |||||||| ||||| |||||||||||  ||||||| |||||||||||    
T  19589282 gaaacatggcatccatgaaaatagagagaaaaagcttaagaaattattatattgaaaatagttg-aaatgatacaa 19589208  T

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Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 9664639 - 9664764
Alignment:
Q  40 aaacatggcatctatgaagatagagagaaaagctt-agaaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtacaaatgag 138  Q
    |||||||||||| ||| | |||||||||||||||| | |||||||| ||||||| |||||||||| ||||||||||||||||||||   |||||||||||    
T  9664639 aaacatggcatccatggatatagagagaaaagcttgaaaaactattgtattgattatagttgaaa-tgatacaagaatgaaaaagataggtacaaatgag 9664737  T
Q  139 tcaatcatgtgacttatatagtaacta 165  Q
    |||| ||||||||||||||||||||||    
T  9664738 tcaaccatgtgacttatatagtaacta 9664764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 165
Target Start/End: Complemental strand, 787437 - 787305
Alignment:
Q  33 tgttacgaaacatggcatctatgaagatagagagaaaagcttagaaa-ctattatattgatgatagttgaaaatgatacaagaatgaaaaagactagtac 131  Q
    ||||| |||||||| |||| ||  | ||||||||||||| || |||| ||||| ||||||||||| |||||| |||||||||||||| |||||   ||||    
T  787437 tgttaggaaacatgtcatccatagatatagagagaaaagtttggaaaactattgtattgatgatacttgaaa-tgatacaagaatgagaaagatcggtac 787339  T
Q  132 aaatgagtcaatcatgtgacttatatagtaacta 165  Q
    ||||||||||||||| ||||||||||||||||||    
T  787338 aaatgagtcaatcatatgacttatatagtaacta 787305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 3075075 - 3074956
Alignment:
Q  40 aaacatggcatctatgaagatagagagaaaagcttag-aaactattata-ttgatgatagttgaaaatgatacaagaatgaaaaagactag-tacaaatg 136  Q
    |||||||||||| ||| | |||||||||||||||| | |||||||| || ||||||||||||| |||||||| ||||||| |||||| ||| ||||||||    
T  3075075 aaacatggcatccatggatatagagagaaaagcttggaaaactattgtatttgatgatagttg-aaatgatataagaatggaaaaga-tagatacaaatg 3074978  T
Q  137 agtcaatcatgtgacttatata 158  Q
    || ||| ||||||| |||||||    
T  3074977 agacaaccatgtgatttatata 3074956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 156
Target Start/End: Original strand, 21146819 - 21146941
Alignment:
Q  33 tgttacgaaacatggcatctatgaagatagagag-aaaagcttag-aaactattatattgatgatagttgaaaatgatacaagaatgaaaaagactagta 130  Q
    ||||| |||||||| |||| ||||| |||||||| |||| ||||| ||| |||| ||||||  ||||||| |||||||||||||||| ||||||   |||    
T  21146819 tgttaagaaacatgtcatccatgaaaatagagagaaaaaacttagaaaattattgtattgaaaatagttg-aaatgatacaagaatg-aaaagagaggta 21146916  T
Q  131 caaatgagtcaatcatgtgacttata 156  Q
    |||||||||||| |||||||||||||    
T  21146917 caaatgagtcaa-catgtgacttata 21146941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 2577151 - 2577018
Alignment:
Q  30 aactgttacgaaacatggcatctatgaagatagagagaa-aagcttag-aaactattatattgatgatagttgaaaatgatacaagaatgaaaaagacta 127  Q
    |||||||  ||||||||||||| ||||| |||||||||| |||||||| ||| |||| ||||||| ||||||| ||||||||||||||||||||||  |     
T  2577151 aactgttgagaaacatggcatccatgaaaatagagagaagaagcttagaaaattattgtattgataatagttg-aaatgatacaagaatgaaaaag--tg 2577055  T
Q  128 gtacaaatgagtcaatcatgtgacttatatagtaacta 165  Q
     |||||||||||||| | ||||||||||||||| ||||    
T  2577054 atacaaatgagtcaa-cttgtgacttatatagtgacta 2577018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 26389160 - 26389102
Alignment:
Q  194 agcctccctcaaactcaaggtaagagaactcttagcttaagtttgaattacaaagctaa 252  Q
    |||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||    
T  26389160 agcctccctcaaactcaaggtaagagaactcttagcttgagtatggattacaaagctaa 26389102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 141
Target Start/End: Original strand, 27172855 - 27172934
Alignment:
Q  62 gagagaaaagcttagaaa-ctattatattgatgatagttgaaaatgatacaagaatgaaaaagactag-tacaaatgagtca 141  Q
    ||||||||||||| |||| ||||| ||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||||    
T  27172855 gagagaaaagcttggaaaactattctattgatgatagttg-aaatgatacaagaatggaaaaga-tagttacaaatgagtca 27172934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 18587369 - 18587499
Alignment:
Q  39 gaaacatggcatctatgaagatagagag-aaaagcttagaaactattatattgatgatagttgaaaatgatacaagaatgaa-----aaagact-agtac 131  Q
    ||||||||||||| ||| | |||||||| |||| ||||||||   ||||||||||||||||| ||||||||||||  |||||     ||||| |  ||||    
T  18587369 gaaacatggcatccatggaaatagagagaaaaaacttagaaaaatttatattgatgatagtt-aaaatgatacaaagatgaaagatgaaagagtcggtac 18587467  T
Q  132 aaatgagtcaatcatgtgacttatatagtaac 163  Q
    |||||| |||| | ||||||||||||||||||    
T  18587468 aaatgaatcaaccttgtgacttatatagtaac 18587499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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