View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_high_24 (Length: 275)
Name: NF7710_high_24
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_high_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 23466062 - 23466327
Alignment:
| Q |
10 |
aaataaataacatggtttcataagcccagtatagcaactaattactatcttccagagaaaacagtagtagcaaaagagtaggtagaattacattccacat |
109 |
Q |
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| T |
23466062 |
aaataaataacacggtttcataagcccagtatagcaactaattactatcttccagagaaaacagtagtagcaaaagagtaggtagaattacattccacat |
23466161 |
T |
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| Q |
110 |
tgctttgtgttccttgactagacatagtgtccaaccttggcaagttattactatctgtaacattatcatcatcaacactgagaaaatcaacaagaatcat |
209 |
Q |
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| T |
23466162 |
tgctttgtgttccttgactagacatagtgtccaaccttggcaagttattactatctgtaacattatcatcatcaacactgagaaaatcaacaagaatcat |
23466261 |
T |
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| Q |
210 |
tcttgtacctggtggctcatccactctcacacgcccttcaagcatatcaaccactctagccatact |
275 |
Q |
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| T |
23466262 |
tcttgtacctggtggctcatccactctcacacgcccttcaagcatatcaaccactctagccatact |
23466327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 46790159 - 46790092
Alignment:
| Q |
193 |
aaatcaacaagaatcattcttgtacctggtggctcatccactctcacacgcccttcaagcatatcaac |
260 |
Q |
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| T |
46790159 |
aaatcaacaagaatcattctagtccctggtggctcctccactctcacacgtccttcaagcatgtcaac |
46790092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 38800138 - 38800084
Alignment:
| Q |
105 |
cacattgctttgtgttccttgactagacatagtgtccaaccttggcaagttatta |
159 |
Q |
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| T |
38800138 |
cacattgatttgtgccctttgattagacatagtgtccaaccttggcatgttatta |
38800084 |
T |
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