View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7710_high_4 (Length: 513)

Name: NF7710_high_4
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7710_high_4
NF7710_high_4
[»] chr4 (22 HSPs)
chr4 (1-498)||(2391119-2391616)
chr4 (4-287)||(2381494-2381777)
chr4 (1-474)||(2382600-2383070)
chr4 (6-286)||(2380241-2380512)
chr4 (320-474)||(2380558-2380714)
chr4 (138-270)||(2533992-2534124)
chr4 (362-473)||(2381814-2381927)
chr4 (137-200)||(2621399-2621462)
chr4 (147-270)||(2547223-2547346)
chr4 (79-200)||(2525504-2525625)
chr4 (161-270)||(2367923-2368032)
chr4 (160-200)||(12124594-12124634)
chr4 (155-200)||(2361217-2361262)
chr4 (71-200)||(2467294-2467423)
chr4 (155-192)||(2486064-2486101)
chr4 (75-107)||(2376407-2376439)
chr4 (160-201)||(2373488-2373529)
chr4 (231-272)||(12124522-12124563)
chr4 (137-192)||(2393829-2393885)
chr4 (70-114)||(2477421-2477465)
chr4 (230-270)||(2625588-2625628)
chr4 (160-192)||(12126658-12126690)
[»] chr5 (1 HSPs)
chr5 (148-205)||(41900496-41900553)


Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 2391119 - 2391616
Alignment:
Q  1 taatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaacacaatcaccccaacacgcttcttacccaaatctccactttcccttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||    
T  2391119 taatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaatgcaatcgccccaacacgcttcttacccaaatctccactttcccttta 2391218  T
Q  101 gacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 200  Q
    | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2391219 gtcctcagatcgctcattctttccaacttctacaaaatccctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 2391318  T
Q  201 tcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaacttgttctcaaggaaacagactgcactgatta 300  Q
     ||||       ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  2391319 ccgaatttttttggatcaacaagaaggatatcttcttcattgttgattgcttccctttactcgaagaacttgttctcaaggaaacagactgcagtgatta 2391418  T
Q  301 cacttctgctaggaagttcgattttgtgctagatgaagataatcattttttggcacttcccaaactccgaaagattagtttgtatggttatgacatcgat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2391419 cacttctgctaggaagttcgattttgtgctagatgaagataataattttttggcacttcccaaactccgaaagattagtttgtatggttatgacatcgat 2391518  T
Q  401 agccaatttattgattatctccacagcaaccctcgacctttcagaggagaagaataacctagatggtgatgatatactccatagtgataattcacagg 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2391519 agccaatttattgattatctccacagcaaccctcgacctttcagaggagaagaataacctagatggtgatgatatactccatagtgataattcccagg 2391616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 4 - 287
Target Start/End: Original strand, 2381494 - 2381777
Alignment:
Q  4 tgtcacatccctcaatctcacatccaccaacctcaattacttctctcaacacaatcaccccaacacgcttcttacccaaatctccactttccctttagac 103  Q
    ||||||||||||||||||| |||||| |||||||| |||||| |||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  2381494 tgtcacatccctcaatctcgcatccagcaacctcacttacttttctctacacaatcaccccaacatgcttcttacccaaatctccgctttccctttagac 2381593  T
Q  104 ctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtttcg 203  Q
    |||| |||||||||| | ||||| || |  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  2381594 ctcaaatcgctcattttctccaagttttttaaaatccctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgttctg 2381693  T
Q  204 aannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaacttgttctcaaggaaacag 287  Q
    ||       ||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||| ||||||||| ||||||    
T  2381694 aaattacttggatcaacaagaaggatttcttattcattgtcgattgcttccctttactcgaagaactcgttctcaagaaaacag 2381777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 2382600 - 2383070
Alignment:
Q  1 taatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaacacaatcaccccaacacgcttcttacccaaa-tctccactttcccttt 99  Q
    ||||||||||||||||||| ||||||||  |||||||| | ||||||||||| ||||| ||| ||||||||||||||  |||| ||||   ||  |||||    
T  2382600 taatgtcacatccctcaatatcacatccctcaacctcactcacttctctcaatacaattacctcaacacgcttcttatgcaaaatctctgtttcaccttt 2382699  T
Q  100 agacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgt 199  Q
    ||| |||| ||| |||||||| |||||| ||| |||||| | || | |||| || |||||||||||||||||||||||||| ||||| ||| | | ||||    
T  2382700 agatctcaaatcactcattctctccaacctcttcaaaatccatataaatggattgcgagctttgtccaaaaagatgaaaaaattgacttctttcatttgt 2382799  T
Q  200 ttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaacttgttctcaaggaaacagactgcactgat- 298  Q
    ||| ||         || |   ||||||||||||  |||||||   |||||||||||||||| || | ||| |||||||||||||||   |||   | |     
T  2382800 ttcaaa---------attacgtagaaggatatctatttcattgccaattgcttccctttactcgatgtactcgttctcaaggaaacatgatgcgtaggtc 2382890  T
Q  299 --tacacttctgctaggaagttcgattttgtgctagatgaagataatcattttttggcacttcccaaactccgaaagattagtttgtatggttatgacat 396  Q
      ||| ||||| || |||| ||  |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||| ||  |||    
T  2382891 agtacccttctacttggaacttttattttgtgctagatgatgataatcaatttttggcacttcccaaactccgaaagattaatttgtatggtaattccat 2382990  T
Q  397 cgatagccaatttattgattatctccacagcaaccctcgaccttt--cagaggagaagaataacctagatggtgatgata 474  Q
    |||||||||| ||||| ||||||| | ||  |||| | |||||||  ||||||||||||||||| |||||||| ||||||    
T  2382991 cgatagccaaattattaattatcttcgcaaaaaccgtggacctttcacagaggagaagaataacttagatggtaatgata 2383070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 6 - 286
Target Start/End: Original strand, 2380241 - 2380512
Alignment:
Q  6 tcacatccctcaatctcacatccaccaacctcaattacttctctcaacacaatcaccccaacacgcttcttacccaaatctccactttccctttagacct 105  Q
    |||||||||||||||||||||||| |||||||          ||||| ||||||||| ||||||||||||||| ||||||||| |||| |||||||| ||    
T  2380241 tcacatccctcaatctcacatccatcaacctcc---------ctcaatacaatcacctcaacacgcttcttacacaaatctccgctttacctttagatct 2380331  T
Q  106 cagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtttcgaa 205  Q
    || |||||||||||| |||||| ||| |||||| || ||| |||| || ||| |||||||||||||||||||||||||||| ||| | |  |||||| ||    
T  2380332 caaatcgctcattctctccaacctcttcaaaatcccgaaaaatggattgcgacctttgtccaaaaagatgaaaaatttgacttctttcatgtgtttcaaa 2380431  T
Q  206 nnnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaacttgttctcaaggaaaca 286  Q
           ||||||| ||||||||||| | |||||||| |||||||||||||| |||||||| ||| |||||||||||||||    
T  2380432 attacttggatcaataagaaggatatttacttcattgctgattgcttcccttcacttgaagtactcgttctcaaggaaaca 2380512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 320 - 474
Target Start/End: Original strand, 2380558 - 2380714
Alignment:
Q  320 gattttgtgctagatgaagataatcattttttggcacttcccaaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatc 419  Q
    ||||||| ||||||||| |||||| | ||||| |||||||| ||||||||||||||||||||||||||| |   ||||||||||||| ||||| ||||||    
T  2380558 gattttgagctagatgatgataataaatttttagcacttccaaaactccgaaagattagtttgtatggtaactccatcgatagccaaattattaattatc 2380657  T
Q  420 tccacagcaaccctcgacctttca--gaggagaagaataacctagatggtgatgata 474  Q
    ||| ||  |||| | |||||||||  ||||||||||||||| |||||||| ||||||    
T  2380658 tccgcaaaaaccgtggacctttcacggaggagaagaataacttagatggtaatgata 2380714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 138 - 270
Target Start/End: Complemental strand, 2534124 - 2533992
Alignment:
Q  138 ttcctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttctt 237  Q
    ||||| || ||| |||||||||||||||||| |||||||||||||| || ||||| |||||||   ||         ||||||||||| ||| |||||||    
T  2534124 ttcctgaaaatgagttccgagctttgtccaagaagatgaaaaatttaacatctctcacttgttatcaaatgagctatatcaacaagaatgatctcttctt 2534025  T
Q  238 cattgttgattgcttccctttacttgaagaact 270  Q
     |||| |||||| ||||||||||||||||||||    
T  2534024 gattgctgattgtttccctttacttgaagaact 2533992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 362 - 473
Target Start/End: Original strand, 2381814 - 2381927
Alignment:
Q  362 aaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgaccttt--cagaggagaagaataacc 459  Q
    |||||||||||||||||||||  ||||  | |||| ||| ||||||||||| ||||||||| || ||||| | |||||||  ||||| |||||||||||     
T  2381814 aaactccgaaagattagtttgcgtggtatttacattgatcgccaatttattaattatctccgcaacaaccgtggacctttcacagagtagaagaataact 2381913  T
Q  460 tagatggtgatgat 473  Q
    |||||||| |||||    
T  2381914 tagatggtaatgat 2381927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 2621399 - 2621462
Alignment:
Q  137 attcctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 200  Q
    ||||||| ||||||||| |||||||| |||||||| |||||||||||||| ||||| |||||||    
T  2621399 attcctacagatgggttgcgagctttctccaaaaatatgaaaaatttgacatctctcacttgtt 2621462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 147 - 270
Target Start/End: Complemental strand, 2547346 - 2547223
Alignment:
Q  147 atgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttga 246  Q
    ||||||| |||||||||||  ||||||||||||||||||| ||||| | ||||| | ||         |||| |||||| ||| | |||||||||| |||    
T  2547346 atgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccaaaatcacctttatcagcaagaatgatttattcttcattgctga 2547247  T
Q  247 ttgcttccctttacttgaagaact 270  Q
    ||| ||||||||||||||||||||    
T  2547246 ttgtttccctttacttgaagaact 2547223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 2525625 - 2525504
Alignment:
Q  79 ccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaaagatgaaa 178  Q
    ||||||||||||||||||||||||||||| |||||||| ||| | | ||  |  |||  ||||| || ||| ||| || | ||||||||| || ||||||    
T  2525625 ccaaatctccactttccctttagacctcaaatcgctcactctctaccacccccccaaggttcctcaaaatgagttgcgtgttttgtccaagaaaatgaaa 2525526  T
Q  179 aatttgacctctcttacttgtt 200  Q
    |||||||| ||||| |||||||    
T  2525525 aatttgacatctctcacttgtt 2525504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 270
Target Start/End: Original strand, 2367923 - 2368032
Alignment:
Q  161 ttgtccaaaaagatgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttac 260  Q
    |||||||||| ||||||||| ||||||||||||||||||| || |       | ||  ||||||  ||| |||||||||||| |||||| ||||||||||    
T  2367923 ttgtccaaaaggatgaaaaacttgacctctcttacttgttccggaatgattagtattcacaagagtgatctcttcttcattgctgattgtttccctttac 2368022  T
Q  261 ttgaagaact 270  Q
    | ||||||||    
T  2368023 tcgaagaact 2368032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 12124634 - 12124594
Alignment:
Q  160 tttgtccaaaaagatgaaaaatttgacctctcttacttgtt 200  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  12124634 tttgtccaaaaagatgaaaaatttgacctctctcacttgtt 12124594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 2361217 - 2361262
Alignment:
Q  155 cgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 200  Q
    ||||||||||||||||| |||||||||||||| ||||| |||||||    
T  2361217 cgagctttgtccaaaaaaatgaaaaatttgacatctctcacttgtt 2361262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 200
Target Start/End: Complemental strand, 2467423 - 2467294
Alignment:
Q  71 cttcttacccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaa 170  Q
    ||||||||| ||||||||||||||||||| ||||||| ||| |||| ||| | | ||  |   |   |||||  ||||||||| |||||||| ||||||     
T  2467423 cttcttaccaaaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaag 2467324  T
Q  171 agatgaaaaatttgacctctcttacttgtt 200  Q
    |||||||||||||||| || || |||||||    
T  2467323 agatgaaaaatttgacatcactcacttgtt 2467294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 2486101 - 2486064
Alignment:
Q  155 cgagctttgtccaaaaagatgaaaaatttgacctctct 192  Q
    |||||||||||||||||||||||||||||||| |||||    
T  2486101 cgagctttgtccaaaaagatgaaaaatttgacatctct 2486064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 2376407 - 2376439
Alignment:
Q  75 ttacccaaatctccactttccctttagacctca 107  Q
    |||||||||||||||||||||||||||||||||    
T  2376407 ttacccaaatctccactttccctttagacctca 2376439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 2373488 - 2373529
Alignment:
Q  160 tttgtccaaaaagatgaaaaatttgacctctcttacttgttt 201  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||    
T  2373488 tttgtccgaaaagatgaaatatttgacctctctcacttgttt 2373529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 12124563 - 12124522
Alignment:
Q  231 tcttcttcattgttgattgcttccctttacttgaagaacttg 272  Q
    |||||||||||| |||||| ||||||||||| ||||||||||    
T  12124563 tcttcttcattgctgattgtttccctttactagaagaacttg 12124522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 2393829 - 2393885
Alignment:
Q  137 attcctaaagatgggttccgagctttgtccaaaaagatg-aaaaatttgacctctct 192  Q
    |||| |||| ||||||| |||||||||||| |||||||| ||||||||||| |||||    
T  2393829 attcataaaaatgggttgcgagctttgtcccaaaagatgaaaaaatttgacatctct 2393885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 2477465 - 2477421
Alignment:
Q  70 gcttcttacccaaatctccactttccctttagacctcagatcgct 114  Q
    ||||||||||||||| ||||||||  || ||||||||||||||||    
T  2477465 gcttcttacccaaatatccactttagctatagacctcagatcgct 2477421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 2625588 - 2625628
Alignment:
Q  230 atcttcttcattgttgattgcttccctttacttgaagaact 270  Q
    |||||||| ||||||||||| ||||||||||| ||||||||    
T  2625588 atcttctttattgttgattgtttccctttactcgaagaact 2625628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 12126690 - 12126658
Alignment:
Q  160 tttgtccaaaaagatgaaaaatttgacctctct 192  Q
    |||||||||| ||||||||||||||||||||||    
T  12126690 tttgtccaaacagatgaaaaatttgacctctct 12126658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 41900496 - 41900553
Alignment:
Q  148 tgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtttcgaa 205  Q
    |||||| |||||||| ||||||||||| | || |||||||||||| ||||||| ||||    
T  41900496 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgttacgaa 41900553  T

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