View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7710_high_7 (Length: 481)
Name: NF7710_high_7
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 15 - 470
Target Start/End: Complemental strand, 36799300 - 36798836
Alignment:
| Q |
15 |
aattctaccttctcatggggtgtgaatgttaggttacaactcagctatgtacttaagtggcactcaagctgaacttttgtgaagcattgggtaatttcta |
114 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
36799300 |
aattctaccttcgcatggggtgtgaatgttaggttacaactcagctatgtacttcagtggcactcatgctgaacttttatgaagcattgggtaatttcta |
36799201 |
T |
|
| Q |
115 |
actttcgatctataatttcttgaaatgannnnnnnnn----aacacaaatatgcatttcaaatcaaaggattgaactcaattgattaataaattacatct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36799200 |
actttcgatctataatttcttgaaatgatttttatttttttaacacaaatatgcatttcaaatcaaaggattgaactcaattgattaataaattacatct |
36799101 |
T |
|
| Q |
211 |
catgatgaactgtttagaaaattttaaatttgtccaaactttttatttnnnnnnntacatgcatgttatttccgttnnnnnnnnnn-----tgcagcatg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
36799100 |
catgatgaactgtttagaaaattttaaatttgtccaaactttttatttaaaaaaatacatgcatgttatttccgttaaaaaaaaaaaaaaatgcagcatg |
36799001 |
T |
|
| Q |
306 |
ttatttgttattaattttaatgtgaatgtgatggacatgactttgtgagagcgattgacatgtaagcatgactgcaattgaatatcatgttcatttcagc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36799000 |
ttatttgttattaattttaatgtgaatgtgatggacatgactttgtgagagcgattgacatgtaagcatgactgcaattgaatatcatgttcatttcagc |
36798901 |
T |
|
| Q |
406 |
atcaaaggccttaactaaagtacatgcataaaatacatatatgcatgtttaaattatgtcatatt |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36798900 |
atcaaaggccttaactaaagtacatgcataaaatacatatatgcatgtttaaattatgtcatatt |
36798836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University