View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7710_high_9 (Length: 458)
Name: NF7710_high_9
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 22 - 441
Target Start/End: Original strand, 39895971 - 39896412
Alignment:
| Q |
22 |
ccaaattaattaagaagttggtgaaaaaaggaaagacttttcttaacgttgtgtgaatataattgaaagcattagttg------------------gttg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39895971 |
ccaaattaattaagaagttggtgaaaaaaggaaagacttttcttaacgttgtgtgaatataattgaaagcattagttgttgatatttgatggtttggttg |
39896070 |
T |
|
| Q |
104 |
gggaggaatttggtgtcattaatttcttttcattattggaggaagaattatgaattatgagtgcatgtttgagtgtcttcacgtggaagattaggttgtg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39896071 |
gggaggaatttggtgtcattaatttcttttcattattggaggaagaattatgaattatgagtgcatgtttgagtgtcttcacgtggaagattaggttgtg |
39896170 |
T |
|
| Q |
204 |
atgatgacgaaattaaggtcaataaggatgggaaagaaagctttcggttgggtcattgttttcttcttggcgtggca----tatgactgtcagatgcaaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39896171 |
atgatgacgaaattaaggtcaataaggatgggaaagaaagctttcggttgggtcattgttttcttcttggcgtggcatatgtatgactgtcagatgcaaa |
39896270 |
T |
|
| Q |
300 |
cgccaattaagagcattattattatgacacaggaaaattatatttcaagattatggtatgtggatttggtagggaattagggtacacaactaatttggca |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39896271 |
cgccaattaagagcattattattatgacacaggaaaattatatttcaagattatggtatgtggatttggtagggaattagggtacacaactaatttggca |
39896370 |
T |
|
| Q |
400 |
aaatgtcattcatgtttatgaaaaaagttatcatatgccatt |
441 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39896371 |
aaatgtcattcatgtttatgtaaaaagttatcatatgccatt |
39896412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University