View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_11 (Length: 505)
Name: NF7710_low_11
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 408
Target Start/End: Original strand, 13706734 - 13707124
Alignment:
| Q |
16 |
ttagttatgttctgaagaatgggtatgtagcaatactagaactcttagagagttttcgggtttgagtttcgccagcgtcctagaagaatgataactgtaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13706734 |
ttagttatgttctgaagaatgggtatgtagcaatactagaactcttagagagttctcgggtttgagtttcgccagcgtcctagaagaatgacaactgtaa |
13706833 |
T |
|
| Q |
116 |
aaatatattgtattttatctttgagatttaaggnnnnnnnctttgtcatgtaccgagacaccactcatggttcaatattttatagatcgaatttaaatct |
215 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13706834 |
aaatatattgtattttatctttgagatttaagaattttttctttgttatgtaccgagacaccactcatggttcaatattttatagatcgaacttaaatct |
13706933 |
T |
|
| Q |
216 |
tttttgttcatttaaatcacatattattcaaggaattaatctacatagtctcgcggaatatatacttcacattggaaaaattacaaaaacgtatatataa |
315 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
13706934 |
tttttgttcatttaattcgcatattattcaaggaattaatctacatagtcttgcggaatatat--ttcacattggaaaaattacataaacgtatatataa |
13707031 |
T |
|
| Q |
316 |
tccaacannnnnnnnatgaataatgacacgaaaataaactatatactcaatttgatacttnnnnnnnnnntatatctctaactcacttatttt |
408 |
Q |
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| T |
13707032 |
tccaacattttttttatgaataatgacacgaaaataaactatatattcaatttgatacttaagaaaaaagtatatctctaactcacttatttt |
13707124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 408
Target Start/End: Original strand, 13714225 - 13714615
Alignment:
| Q |
16 |
ttagttatgttctgaagaatgggtatgtagcaatactagaactcttagagagttttcgggtttgagtttcgccagcgtcctagaagaatgataactgtaa |
115 |
Q |
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| T |
13714225 |
ttagttatgttctgaagaatgggtatgtagcaatactagaactcttagagagttctcgggtttgagtttcgccagcgtcctagaagaatgacaactgtaa |
13714324 |
T |
|
| Q |
116 |
aaatatattgtattttatctttgagatttaaggnnnnnnnctttgtcatgtaccgagacaccactcatggttcaatattttatagatcgaatttaaatct |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13714325 |
aaatatattgtattttatctttgagatttaagaattttttctttgttatgtaccgagacaccactcatggttcaatattttatagatcgaacttaaatct |
13714424 |
T |
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| Q |
216 |
tttttgttcatttaaatcacatattattcaaggaattaatctacatagtctcgcggaatatatacttcacattggaaaaattacaaaaacgtatatataa |
315 |
Q |
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| T |
13714425 |
tttttgttcatttaattcgcatattattcaaggaattaatctacatagtcttgcggaatatat--ttcacattggaaaaattacataaacgtatatataa |
13714522 |
T |
|
| Q |
316 |
tccaacannnnnnnnatgaataatgacacgaaaataaactatatactcaatttgatacttnnnnnnnnnntatatctctaactcacttatttt |
408 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
13714523 |
tccaacattttttttatgaataatgacacgaaaataaactatatattcaatttgatacttaagaaaaaagtatatctctaactcacttatttt |
13714615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 64 - 375
Target Start/End: Original strand, 13700340 - 13700652
Alignment:
| Q |
64 |
agagttttcgggtttgagtttcgccagcgtcctagaagaatgataactgtaaaaatatattgtattttatctttgagatttaaggnnnnnnnctttgtca |
163 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |
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| T |
13700340 |
agagttctcgggtttgagtttcgccagcgtcctagaagaatgataactgtaaaagtatattgtattttatctttgagatttatggtttttttctttgtca |
13700439 |
T |
|
| Q |
164 |
tgtaccgagacaccactcatggttcaatattttatagatcgaatttaaatcttttttgttcatttaaatcacatattattcaaggaattaatctacatag |
263 |
Q |
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| T |
13700440 |
tgtaccgagacaccactcatggttcaatattttatagatcgaacttaaatcttttttgttcatttaattcacatattattcaaggaattaatcgacatag |
13700539 |
T |
|
| Q |
264 |
tctcgcggaatatatacttcacattggaaaaattacaaaaacgtatatataatccaaca-nnnnnnnnatgaataatgacacgaaaataaactatatact |
362 |
Q |
| |
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|||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13700540 |
tctcgcagaatatatacttcacattagaaaaattacataaacgtatatataatccaacatttttttttatgaataatgacacgaaaataaactatatact |
13700639 |
T |
|
| Q |
363 |
caatttgatactt |
375 |
Q |
| |
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||||||||||||| |
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| T |
13700640 |
caatttgatactt |
13700652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 126 - 319
Target Start/End: Original strand, 17394275 - 17394470
Alignment:
| Q |
126 |
tattttatctttgagatttaaggnnnnnnnctttgtcatgtaccgagacaccactcatggttcaatattttatagatcgaatttaaatcttttttgttca |
225 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
17394275 |
tattttatctttgagatttaaggtttttttctttgtcatgtaccgagacactactcatggttcaatattttatagatcaaacttaaatcttttttgttca |
17394374 |
T |
|
| Q |
226 |
tttaaatcacatattattcaaggaattaatctacatagtctcgcggaatatata--cttcacattggaaaaattacaaaaacgtatatataatcca |
319 |
Q |
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||||| || ||||||| |||||||||||| |||||||||||||| ||||||||| |||||||||||||| ||||| |||||||||||||||||| |
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| T |
17394375 |
tttaattcgcatattactcaaggaattaaactacatagtctcgcagaatatatatgtttcacattggaaaagttacataaacgtatatataatcca |
17394470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 17390777 - 17390892
Alignment:
| Q |
16 |
ttagttatgttctgaagaatgggtatgtagcaatactagaactcttagagagttttcgggtttgagtttcgccagcgtcctagaagaatgataactgtaa |
115 |
Q |
| |
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||||||||||| | || |||||| ||||| |||||||||||||||| ||||||| |||||||||||||||| |||| | ||||||||||||||||| ||| |
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| T |
17390777 |
ttagttatgtttttaaaaatgggcatgtaccaatactagaactcttggagagttctcgggtttgagtttcgtcagctttctagaagaatgataactataa |
17390876 |
T |
|
| Q |
116 |
aaatatattgtatttt |
131 |
Q |
| |
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||| ||||||||||| |
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| T |
17390877 |
aaaattattgtatttt |
17390892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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