View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7710_low_14 (Length: 499)
Name: NF7710_low_14
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_14 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 14275945 - 14276325
Alignment:
| Q |
18 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14275945 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaaccaagaaacgataagccccaaccaattatgggcactcaagacttcaggtcccaaccaat |
14276044 |
T |
|
| Q |
118 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccg----accaaattaatc |
213 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| |||||||||| | ||||||||||||||| |||||||||||| |
|
|
| T |
14276045 |
tataggcaccacgcgacaatgaatgtatgcatgcgacacatgattattaactccaaaaaatagatcacacacaatgagtatccgaccaaccaaattaatc |
14276144 |
T |
|
| Q |
214 |
attgtcttaagcacctgctagagacacaaattaca-cctcaataactttgacttacaaatatgcaagacctcaattcatacatgaaaacaatgaattata |
312 |
Q |
| |
|
|||||||||| ||||||| ||||||||| |||||| | |||||||| ||||||||||||||||||| || ||||||| | |||||||||| |||||| |
|
|
| T |
14276145 |
attgtcttaaccacctgccagagacacagattacatcgacaataactctgacttacaaatatgcaagtccgcaattcagatatgaaaacaacaaattatg |
14276244 |
T |
|
| Q |
313 |
ctcacaaccaatacaaaagcaagttcacatagtatgtaaacatggtacaatacataaacatgttaaaaacatcatcctttt |
393 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14276245 |
ctcacagccaatacaaaagcaagttcacatagtatgtaagcatggtacaatacataaacatgttaaaaacatcatcatttt |
14276325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 30 - 393
Target Start/End: Original strand, 37627055 - 37627421
Alignment:
| Q |
30 |
acgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaattataggcaccac |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
37627055 |
acgagcctcaaccaattatgagcactcaaa-aggaaacaataagcctcaaccaattatgggcactcaagacttcggatcccaaccaattatgggcaccaa |
37627153 |
T |
|
| Q |
130 |
acgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattgtcttaagcacct |
229 |
Q |
| |
|
||||||| |||||||||||||||||| | |||||||||||| ||||||| | |||||||||||||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
37627154 |
gcgacaatgaatgtatgcatgcgacacctgcatattaactccac-aaatagaccactcacaatgagtatgcgactaaattaatcattgtcttaaccacct |
37627252 |
T |
|
| Q |
230 |
gctagagacacaaattacacc-tcaataactttgacttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatactcacaac----caa |
323 |
Q |
| |
|
|||||||||| |||||||| || || ||||| || |||||||| |||||||||| | |||| |||||| | ||||||||||||| ||| |
|
|
| T |
37627253 |
gctagagacattgattacaccgacaggaatgctgactaacaaaatatgctagacctcaatcaaggcatg-aaacaacaatttatactcacaaccaagcaa |
37627351 |
T |
|
| Q |
324 |
tacaaaagcaagttcacatagtatgtaaacatggtacaatacataaacatgttaaaaacatcatcctttt |
393 |
Q |
| |
|
|| |||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37627352 |
tataaaatcaagttcacatagtatgtaagcatgatacaatacataaacatgttaaaaacatcatcctttt |
37627421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 166 - 454
Target Start/End: Original strand, 37806299 - 37806590
Alignment:
| Q |
166 |
aactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattgtcttaagcacctgctagagacacaaattacacc-tcaataactttgac |
264 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| || |||| ||| |
|
|
| T |
37806299 |
aactccacaaaatagaccactcacaatgagtatccgactaaattaatcattgtcttaaccacctgctagagacattgattacaccgacagtaac---gac |
37806395 |
T |
|
| Q |
265 |
ttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatactcacaac----caatacaaaagcaagttcacatagtatgtaaacatggta |
359 |
Q |
| |
|
| || ||||||||||||||||||| || |||| ||| || | ||||||||||||| |||||||||| |||||||||||||||||||| |||| || |
|
|
| T |
37806396 |
taacaaaatatgcaagacctcaatccaggcatg-aaataacaagttatactcacaacaaagcaatacaaaatcaagttcacatagtatgtaagcatgata |
37806494 |
T |
|
| Q |
360 |
caatacataaacatgttaaaaacatcatcctttt-nnnnnnnncaagtaagtacatatataaaatnnnnnnntggagcgccctttcccttgcctta |
454 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
37806495 |
caatacataaacatgtcaaaaacatcatccttttaaaaaaaaacaagtaaatacatatataaaataaaaaaatggagcgccctttcccttacctta |
37806590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 73 - 156
Target Start/End: Original strand, 37803601 - 37803684
Alignment:
| Q |
73 |
gccccaaccaattatgggcactcaagacttcgaatcccaaccaattataggcaccacacgacaataaatgtatgcatgcgacac |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
37803601 |
gccccaaccaattatgggcactcaagacttcgggtcccaaccaattatgggcaccacacgacaatgaatgtatgcatgcgacac |
37803684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 208 - 346
Target Start/End: Original strand, 33614491 - 33614635
Alignment:
| Q |
208 |
ttaatcattgtcttaagcacctgctagagacacaaattacacct-caataactttgacttacaaa-tatgcaagacctcaattcatacatgaaaacaatg |
305 |
Q |
| |
|
|||||||||||||||| ||| | | |||||||||||||||||| |||||| || |||||||||| ||||||||||| ||||||| ||| ||||||| |
|
|
| T |
33614491 |
ttaatcattgtcttaaccacatacgagagacacaaattacaccaacaataatttcgacttacaaaatatgcaagaccacaattcacgcataaaaacaaca |
33614590 |
T |
|
| Q |
306 |
aattatactcacaac----caatacaaaagcaagttcacatagta |
346 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||| |||||| |
|
|
| T |
33614591 |
aattatactcacaaccaaacaatacaaaatcaagttcatatagta |
33614635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 11991764 - 11992136
Alignment:
| Q |
18 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
117 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
11991764 |
caaatgaaatcaacgagcctcaaccaattatgagcactcaaccaagaaacgataagcctcaaccaattatgggcactcaagactttgggtcccaaccaat |
11991863 |
T |
|
| Q |
118 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattg |
217 |
Q |
| |
|
||| ||||||| ||||||| |||| |||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
11991864 |
tatgggcaccatgcgacaatgaatgcatgcttgcgacacatggttattaactccacaaaatagatcactcacaatgagtattcgaccaaattaatcattg |
11991963 |
T |
|
| Q |
218 |
tctt-aagcacctgctagagacacaaattacacc-tcaataactttgacttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatact |
314 |
Q |
| |
|
|||| || |||||||||||||||| |||||||| |||||||| ||||||| |||||||||||||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
11991964 |
tcttaaaccacctgctagagacacggattacaccgacaataactcggacttacaaaatatgcaagaccgcaattcagacatgaaaacaacgaattatact |
11992063 |
T |
|
| Q |
315 |
ca----caaccaatacaaaagcaagttcacatagtatgtaaacatggtacaatacataaacatgttaaaaacat |
384 |
Q |
| |
|
|| ||| |||||||||| ||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
11992064 |
cacagccaagcaatacaaaatcaagttc-catagtatgtatgcatggtacaatacataaatatgttaaaaacat |
11992136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 2188349 - 2187970
Alignment:
| Q |
18 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2188349 |
caaaagaagacaacgagcctcaaccaattatgagcactcaaa-aggaaacaataagccccaaccaattatgggcactcaagacttcgggtcccaaccaat |
2188251 |
T |
|
| Q |
118 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattg |
217 |
Q |
| |
|
||| ||||||| ||||||| |||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||||||| |||||||||||| |
|
|
| T |
2188250 |
tatgagcaccacgcgacaatgaatgtatgcatgcgacacctgcttattaactccacaaaatagaccactcacaatgagtatccgacttaattaatcattg |
2188151 |
T |
|
| Q |
218 |
tcttaagcacctgctagagacacaaattacacc-tcaataactttgacttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatactc |
315 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| || |||| ||||| || ||||||||||||||||||| || |||| |||||| | |||||||| |
|
|
| T |
2188150 |
tcttaaccacctgctagagacattgattacaccgacagtaacgctgactaacaaaatatgcaagacctcaatccaagcatg-aaacaacaagttatactc |
2188052 |
T |
|
| Q |
316 |
acaac----caatacaaaagcaagttcacatagtatgtaaacatggtacaatacataaacatgttaaaaacatcatcctttt |
393 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2188051 |
acaaccaatcaatacaaaatcaagttcacatagtatgtaagcatgatacaatacataaacatgttaaaaacatcaccctttt |
2187970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 19632556 - 19632933
Alignment:
| Q |
18 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
117 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
19632556 |
caaaagaagacaacaagcctcaaccaattatgagcactcaaa-aggaaacaataagccccaaccaattatgg-cactcaagacttcgggtcccaaccaat |
19632653 |
T |
|
| Q |
118 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattg |
217 |
Q |
| |
|
||| ||||||| ||||| | |||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
19632654 |
tatgagcaccacgcgacactgaatgtatgcatgcgacacctgcttattaactccacaaaatagaccactcacaatgagtatccgactaaattaatcattg |
19632753 |
T |
|
| Q |
218 |
tcttaagcacctgctagagacacaaattacacc-tcaataactttgacttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatactc |
315 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| || |||| |||||| || ||||||||||||||||||| || |||| |||||| | |||||||| |
|
|
| T |
19632754 |
tcttaaccacctgctagagacattgattacaccgacagtaacgttgactaacaaaatatgcaagacctcaatccaagcatg-aaacaacaagttatactc |
19632852 |
T |
|
| Q |
316 |
acaac----caatacaaaagcaagttcacatagtatgtaaacatggtacaatacataaacatgttaaaaacatcatccttt |
392 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19632853 |
acaacgaagcaatacaaaatcaagttcacatagtatgtaagcatgatacaatatataaacatgttaaaaacatcatccttt |
19632933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 1608465 - 1608842
Alignment:
| Q |
18 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
117 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
1608465 |
caaaagaaatcaaagagcctcaaccaattatgagcactcaaa-aggaaacaataagccccaaccaattatgggcactcaagacttagggtcccaaccaat |
1608563 |
T |
|
| Q |
118 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattg |
217 |
Q |
| |
|
||| |||||||| |||| || |||||||||||||||||| | ||||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
1608564 |
tatgggcaccacgcgaccatgaatgtatgcatgcgacacctgcttattaactccacaagatagaccactcacaatgagtatccgactaaattaatcattg |
1608663 |
T |
|
| Q |
218 |
tcttaagcacctgctagagacacaaattacacctcaataactttgacttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatactca |
316 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| || ||||| |||| || |||||||||||||| ||| || || | ||| | ||||||||| |
|
|
| T |
1608664 |
tcttaaccacctgctagagacattgattacacgacagtaactccgactaacaaaatatgcaagaccacaaaccaggcaag-gaacggcaagttatactca |
1608762 |
T |
|
| Q |
317 |
caac----caatacaaaagcaagttcacatagtatgtaaacatggtacaatacataaacatgttaaaaacatcatccttt |
392 |
Q |
| |
|
|||| |||||||||| ||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1608763 |
caaccaagcaatacaaaatcaaattcacatagtatgtaagcatgatacaatacataaacatgttaaaaacatcatccttt |
1608842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 18 - 499
Target Start/End: Complemental strand, 8378031 - 8377546
Alignment:
| Q |
18 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
117 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8378031 |
caaaagaaatcaacgggcctcaaccaattatgagcactca-caaggaaacaataagccccaaccaattatgggcactcaagacttcgggtcccaaccaat |
8377933 |
T |
|
| Q |
118 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattg |
217 |
Q |
| |
|
||| |||||||| | ||||| |||||||||||||||||| | |||||||||||||||||||| |||||||||| |||||||| |||||||||| || |
|
|
| T |
8377932 |
tatgggcaccacgcaacaatgaatgtatgcatgcgacacctgcatattaactccacaaaatagacaactcacaatgaatatccgactaaattaatcactg |
8377833 |
T |
|
| Q |
218 |
tcttaagcacctgctagagacacaaattacacc-tcaataactttgacttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatactc |
315 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| || |||| ||||| || ||||||||||||||||||| || |||| |||||| | |||||||| |
|
|
| T |
8377832 |
tcttaaccacctgctagagacattgattacaccgacagtaacgctgactaacaaaatatgcaagacctcaatccaggcatg-aaacaacaatttatactc |
8377734 |
T |
|
| Q |
316 |
acaac----caatacaaaagcaagtt-cacatagtatgtaaacatggtacaatacataaacatgttaaaaacatcatccttttnnnnnnnncaagtaagt |
410 |
Q |
| |
|
||||| |||||||||| ||| || || | | ||| |||| |||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
8377733 |
acaaccaagcaatacaaaatcaatttatactaacaaaataagcatgatacaatacataaacatgttaaaaacatcatcctttt-ataaaaacaagtaaat |
8377635 |
T |
|
| Q |
411 |
acatatataaaatnnnnnnntggagcgccctttcccttgccttaacaacaacagctcttaagatttccaccaacagtctttactctatc |
499 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8377634 |
acatatataaaataaaaaaatggagcgccctttcccttaccttaacaacagcagctcttaagatttccaccaacagtctttactctatc |
8377546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 393
Target Start/End: Original strand, 5187408 - 5187512
Alignment:
| Q |
293 |
catgaaaacaatgaattatactcacaaccaa----tacaaaagcaagttcacatagtatgtaaacatggtacaatacataaacatgttaaaaacatcatc |
388 |
Q |
| |
|
|||||||| || |||||||||||||||||| | ||||||||||||||| ||||| |||| |||| ||||||||||||||||| |||||| ||||| |
|
|
| T |
5187408 |
catgaaaataaaaaattatactcacaaccaagcaatccaaaagcaagttcacgtagtaagtaagcatgttacaatacataaacatgacaaaaacgtcatc |
5187507 |
T |
|
| Q |
389 |
ctttt |
393 |
Q |
| |
|
|||| |
|
|
| T |
5187508 |
atttt |
5187512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 41313585 - 41313965
Alignment:
| Q |
18 |
caaaagaaa-acaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaa |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41313585 |
caaaagaaagacaacgagcctcaaccaattatgagcactcaaa-aggaaacaataagccccaaccaattatgggcactcaagacttcgggtcccaaccaa |
41313683 |
T |
|
| Q |
117 |
ttataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcatt |
216 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||||||| |||||||||||| |
|
|
| T |
41313684 |
ttatgagcaccacgcgacaatgaatgtatgcatgcgacacctgcttattaactccacaaaatagaccactcacaatgagtatccgactaaattaatcatt |
41313783 |
T |
|
| Q |
217 |
gtcttaagcacctgctagagacacaaattacacc-tcaataactttgacttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatact |
314 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| || |||| | ||| || ||||||||||||||||||| || |||| |||||| | ||||||| |
|
|
| T |
41313784 |
gtcttaaccacctgctagagacattgattacaccaacagtaacgctaactaacaaaatatgcaagacctcaatccaggcatg-aaacaacaagttatact |
41313882 |
T |
|
| Q |
315 |
cacaac----caatacaaaagcaagttcacatagtatgtaaacatggtacaatacataaacatgttaaaaacatcatcctttt |
393 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||| |||| |
|
|
| T |
41313883 |
cacaaccaagcaatacaaaatcaagttcacatagtatgtaagcatggtaaaatacttaaacatgttaaaaacatcatcatttt |
41313965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 8e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 18 - 458
Target Start/End: Complemental strand, 19215995 - 19215546
Alignment:
| Q |
18 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
117 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19215995 |
caaaagaagacaacgagcctaaaccaattatgagcactcaaa-aggaaacaataagccccaaccaattatgggcactcaagacttcgggtcccaaccaat |
19215897 |
T |
|
| Q |
118 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattg |
217 |
Q |
| |
|
||| ||||||| ||||||| ||||||||||||| |||| | |||||||||||||||||||| | ||||||||||||||||||| |||||||||||| |
|
|
| T |
19215896 |
tatgggcaccatgcgacaatgaatgtatgcatgcaacacctgcttattaactccacaaaataggccactcacaatgagtatccgactaaattaatcatta |
19215797 |
T |
|
| Q |
218 |
tcttaagcacctgctagagacacaaattacacc-tcaataactttgacttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatactc |
315 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| | ||| ||||||| |||||||||||||| ||||||| |||||||||||| | |||||||| |
|
|
| T |
19215796 |
tcttaaccacctgctagagacactgattacaccgatagtaataccgacttacaaaatatgcaagaccacaattcagacatgaaaacaacaagttatactc |
19215697 |
T |
|
| Q |
316 |
acaac----caatacaaaagcaagtt-------cacatagtatgtaaacatggtacaatacataaacatgttaaaaacatcatccttttnnnnnnnncaa |
404 |
Q |
| |
|
||||| |||||||||| |||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||| |||| ||| |
|
|
| T |
19215696 |
acaaccaagcaatacaaaatcaagttcacatagcacatagtatgtaagcatggtacaatacttaaacatgttaaaaacatcatcatttt---aacaacaa |
19215600 |
T |
|
| Q |
405 |
gtaagtacatatataaaatnnnnnnntggagcgccctttcccttgccttaacaa |
458 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
19215599 |
gtaaatacatatataaaatagaaaaatggagcgccctttcccttaccttaacaa |
19215546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 19589736 - 19589466
Alignment:
| Q |
21 |
aagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaattat |
120 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||| | |||||| || ||||||||||||| ||||||||||||||| | | |||||||||||| |
|
|
| T |
19589736 |
aagaaaacaacgagtctcaaccaattatgaacactcaaaaca-aaacgacaaaccccaaccaattacgggcactcaagacttagggttccaaccaattat |
19589638 |
T |
|
| Q |
121 |
aggcaccacacgacaataaatgtatgcatgcgacacataatt-attaactcca-caaaatagatcgctcacaatgagtatccgaccaaattaatcattgt |
218 |
Q |
| |
|
|||| |||||||| || ||| |||||||| | |||| || |||||||||| |||||||||| | ||| ||||||||| || |||||||| |||| |
|
|
| T |
19589637 |
gggcagcacacgacgatgaatatatgcatgtaatacatggttaattaactccataaaaatagatcaattacactgagtatccaactaaattaatggttgt |
19589538 |
T |
|
| Q |
219 |
cttaagcacctgctagagacacaaattaca-cctcaataactttgacttac-aaatatgcaagacctcaatt |
288 |
Q |
| |
|
||| |||| ||||||||||| |||||| | |||||| || ||| ||| |||||||||||||| ||||| |
|
|
| T |
19589537 |
tctaaccaccatctagagacacagattacatcaacaataatttcgacatacaaaatatgcaagaccacaatt |
19589466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 29823121 - 29822683
Alignment:
| Q |
18 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
29823121 |
caaaagaagacaacgagcctcaaccaattatgagcactcaaa-aggaaacaataagccccaaccaattatgggcgctcaagacttcgggtcccaaccaat |
29823023 |
T |
|
| Q |
118 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattg |
217 |
Q |
| |
|
||| |||||||| ||||||| |||||||||||||||||| | ||||| ||||||||||||||| | ||||||||||||||| ||| ||||||||||| | |
|
|
| T |
29823022 |
tatgggcaccacgcgacaatgaatgtatgcatgcgacacctgcttatt-actccacaaaatagaccactcacaatgagtatctgactaaattaatcatgg |
29822924 |
T |
|
| Q |
218 |
tcttaagcacctgctagagacacaaattacacc-tcaataactttgacttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatactc |
315 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| || ||||| |||| || |||||||||||||| |||| || |||| |||||| | | |||||| |
|
|
| T |
29822923 |
tcttaaccacctgctagagacattgattacaccgacagtaactccgactaacaaaatatgcaagaccacaatccaagcatg-aaacaacaagtcatactc |
29822825 |
T |
|
| Q |
316 |
acaac----caatacaaaagcaagttcacatagtatgtaaacatggtacaatacataaacatgttaaaaacatcatccttttnnnnnnnncaagtaagta |
411 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||| ||||||| || |
|
|
| T |
29822824 |
acaaccaagcaatacaaaatcaagttcacatagtatgtaagcatgatacaatacataaacatgttaaaaacaccatcctttt-aaaaaaacaagtaaata |
29822726 |
T |
|
| Q |
412 |
catatataaaatnnnnnnntggagcgccctttcccttgcctta |
454 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
29822725 |
catatataaaataaaaaaatggagcgccctttcccttacctta |
29822683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 451958 - 452171
Alignment:
| Q |
18 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
117 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
451958 |
caaaagaaatcaacgagtcccaaccaattatgagcactcaaa-aggaaacaataagccccaaccaattatgggcactcaagacttcgggtcccaaccaat |
452056 |
T |
|
| Q |
118 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattg |
217 |
Q |
| |
|
||| |||||||||||||||| |||||||||||| ||||| | |||||||||||||||||| | | ||||| |||||||| ||||| ||||||||||| |
|
|
| T |
452057 |
tatgggcaccacacgacaatgaatgtatgcatgtgacacctgattattaactccacaaaaaacaccgctcttaatgagtaaccgactaaattaatcat-- |
452154 |
T |
|
| Q |
218 |
tcttaagcacctgctag |
234 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
452155 |
tcttaaccacctgctag |
452171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 269 - 499
Target Start/End: Original strand, 7094022 - 7094255
Alignment:
| Q |
269 |
aaatatgcaagacctcaattcatacatgaaaacaatgaattatactcacaaccaa----tacaaaagcaagttcacatagtatgtaaacatggtacaata |
364 |
Q |
| |
|
||||||||||||||||||| || ||||||| ||| | |||||||||||||||| ||||||| ||||||||| |||||||||| |||| ||||||| |
|
|
| T |
7094022 |
aaatatgcaagacctcaatccaggcatgaaa-caacaatttatactcacaaccaagcaatacaaaatcaagttcacctagtatgtaagcatgatacaata |
7094120 |
T |
|
| Q |
365 |
cataaacatgttaaaaacatcatccttttnnnnnnnncaagtaagtacatatataaaatnnnnnnntggagcgccctttcccttgccttaacaacaacag |
464 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| ||||||||| | ||| |
|
|
| T |
7094121 |
cataaacatgttaaaaacatcatccttttaaaaaaaacaagtaaatacatatataaaataaaaaaatggagcgccctttcccttaccttaacaatagcag |
7094220 |
T |
|
| Q |
465 |
ctcttaagatttccaccaacagtctttactctatc |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7094221 |
ctcttaagatttccaccaacagtctttactctatc |
7094255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 269 - 499
Target Start/End: Original strand, 7097755 - 7097988
Alignment:
| Q |
269 |
aaatatgcaagacctcaattcatacatgaaaacaatgaattatactcacaaccaa----tacaaaagcaagttcacatagtatgtaaacatggtacaata |
364 |
Q |
| |
|
||||||||||||||||||| || ||||||| ||| | |||||||||||||||| ||||||| ||||||||| |||||||||| |||| ||||||| |
|
|
| T |
7097755 |
aaatatgcaagacctcaatccaggcatgaaa-caacaatttatactcacaaccaagcaatacaaaatcaagttcacctagtatgtaagcatgatacaata |
7097853 |
T |
|
| Q |
365 |
cataaacatgttaaaaacatcatccttttnnnnnnnncaagtaagtacatatataaaatnnnnnnntggagcgccctttcccttgccttaacaacaacag |
464 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| ||||||||| | ||| |
|
|
| T |
7097854 |
cataaacatgttaaaaacatcatccttttaaaaaaaacaagtaaatacatatataaaataaaaaaatggagcgccctttcccttaccttaacaatagcag |
7097953 |
T |
|
| Q |
465 |
ctcttaagatttccaccaacagtctttactctatc |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7097954 |
ctcttaagatttccaccaacagtctttactctatc |
7097988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 7093793 - 7093976
Alignment:
| Q |
18 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
7093793 |
caaaagaaatcaacgagcctcaaccaattatgagcactca-caaggaaacaataagccccaaccaattatgggcactcaagacttcgggtcctaaccaat |
7093891 |
T |
|
| Q |
118 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccga |
202 |
Q |
| |
|
||| |||||||| | ||||| |||||||||||||||||| | |||||||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
7093892 |
tatgggcaccacgcaacaatgaatgtatgcatgcgacacctgcatattaactccaccaaatagacaactcacaatgaatatccga |
7093976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 7097526 - 7097709
Alignment:
| Q |
18 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
7097526 |
caaaagaaatcaacgagcctcaaccaattatgagcactca-caaggaaacaataagccccaaccaattatgggcactcaagacttcgggtcctaaccaat |
7097624 |
T |
|
| Q |
118 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccga |
202 |
Q |
| |
|
||| |||||||| | ||||| |||||||||||||||||| | |||||||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
7097625 |
tatgggcaccacgcaacaatgaatgtatgcatgcgacacctgcatattaactccaccaaatagacaactcacaatgaatatccga |
7097709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 269 - 460
Target Start/End: Original strand, 453981 - 454172
Alignment:
| Q |
269 |
aaatatgcaagacctcaattcatacatgaaaacaatgaattatactcacaaccaa----tacaaaagcaagttcacatagtatgtaaacatggtacaata |
364 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | ||||| |||||||||| ||||||||||||||||||||||||| || || |||||| || |
|
|
| T |
453981 |
aaatatgcaagaccacaattcatacatgaaaacaacaagttatattcacaaccaagcaatacaaaagcaagttcacatagtatgaaagcagggtacacta |
454080 |
T |
|
| Q |
365 |
cataaacatgttaaaaacatcatccttttnnnnnnnncaagtaagtacatatataaaatnnnnnnntggagcgccctttcccttgccttaacaaca |
460 |
Q |
| |
|
||||||||||| ||||||||||| |||| ||||||| |||||||||||||| |||||||||||||||| | ||||||||||| |
|
|
| T |
454081 |
tataaacatgtt-aaaacatcatcatttt---aacaacaagtaactacatatataaaataaaaaaatggagcgccctttcccgtaccttaacaaca |
454172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 58603 - 58925
Alignment:
| Q |
18 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
58603 |
caaaagaagacaacgagcctcaaccaattatgagcactcaaaaaggaaacaataagccccaaccaattatgggcactcaagacttcgggtcccaaccaat |
58702 |
T |
|
| Q |
118 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattg |
217 |
Q |
| |
|
||| |||||||| ||||||| ||||||||||||||||| | ||||||| ||||||||| | | | |||| |||||||| ||||| ||||||||||| |
|
|
| T |
58703 |
tatgggcaccacgcgacaatgaatgtatgcatgcgacagctggttattaattccacaaaaaacacctctcataatgagtaaccgactaaattaatcat-- |
58800 |
T |
|
| Q |
218 |
tcttaagcacctgctagagacacaaattacacctcaataactttgacttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatactca |
316 |
Q |
| |
|
|||||| ||||||||||||||||| ||| |||| ||||||| |||||||||||||| |||||||| ||||||||||| | ||||| ||| |
|
|
| T |
58801 |
tcttaaccacctgctagagacacagattgcacc-----------gacttacaaaatatgcaagaccacaattcatgcatgaaaacaacaagttatattca |
58889 |
T |
|
| Q |
317 |
caac----caatacaaaagcaagttcacatagtatg |
348 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| |
|
|
| T |
58890 |
caaccaagcaatacaaaagcaagttcacataatatg |
58925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 16879 - 16839
Alignment:
| Q |
18 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaa |
58 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
16879 |
caaaagaaatcaacgaacctcaaccaattatgagcactcaa |
16839 |
T |
|
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