View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_15 (Length: 490)
Name: NF7710_low_15
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 26 - 482
Target Start/End: Complemental strand, 39173002 - 39172552
Alignment:
| Q |
26 |
gcttctggttcaataccaagcttggctattagaagtctataactcaagaaaaaggacctttaaagaatatataaaaagttgaattgaacaagagtagata |
125 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||| |
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| T |
39173002 |
gcttctggttcaataccgagcttggctattagaagtctataactcaataaaaaggacctttaaagactgtataaaaagttgaattgaacaggagtagata |
39172903 |
T |
|
| Q |
126 |
aagaagaaaatgaaattaattaattgtagaatgagctgagcttcagttgttgttgttttggtataccaagaacagaattaagctattggacaattgcata |
225 |
Q |
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| T |
39172902 |
aagaagaaaatgaaattaattaattgtagaatgagct-----tcagtttttgttgttttggtataccaagaacagaattaagctattggacaactgcata |
39172808 |
T |
|
| Q |
226 |
tttgaaatagtacattatcaaatataactctcccacctttaaaagcattaactacaatttacataaacccagctacaaattcaaaaacgaatatggaaat |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39172807 |
tttgaaatagtacattatcaaatataactctcccacctt-aaaagcattaactacaatttacaaaaacccagctacaaattcaaaaacgaatatggaaat |
39172709 |
T |
|
| Q |
326 |
cgatttttccaattaaatcgattttaatatggaatcggcccacgactgcctatgacttcccatgagtccatgaccataccatatttgattgttaagacag |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39172708 |
cgatttttccaattaaatcgattttaatatggaatcggcccacgactgcctatgacagcccatgagtccatgaccataccatatttgattgttaagacag |
39172609 |
T |
|
| Q |
426 |
aataaataaacgtaacctctcgggtcaatccactccacctcattttcatattcttcg |
482 |
Q |
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| T |
39172608 |
aataaataaacgtaacctctcgggtcaatccactccacctcattttcattttcttcg |
39172552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 38 - 482
Target Start/End: Complemental strand, 39176874 - 39176437
Alignment:
| Q |
38 |
ataccaagcttggctattagaagtctataactcaagaaaaag------------gacctttaaagaatatataaaaagttgaattgaacaagagtagata |
125 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||| |||||||||||| | ||||||||||||| |||||||||||||||| |
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| T |
39176874 |
ataccgagcttggctattagaagtctatgactcaagaaaaagttctatgcagaagacctttaaagactgaataaaaagttgaaatgaacaagagtagata |
39176775 |
T |
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| Q |
126 |
aagaagaaaatgaaattaattaattgtagaatgagctgagcttcagttgttgttgttttggtataccaagaacagaattaagctatt-ggacaattgcat |
224 |
Q |
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| T |
39176774 |
a-gaagaaaatgaaattaatt----gtagaataagctg-----cagtttttgttgttatggtataccaagaacagaattatgctatttggacaattccat |
39176685 |
T |
|
| Q |
225 |
atttgaaatagtacattatcaaatataactctcccacctttaaaagcattaactacaatttacataaacccagctacaaattcaaaaacgaatatggaaa |
324 |
Q |
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| T |
39176684 |
atttgaaatagtacattgtcaaatataactctaccacctttaaaagcattaactacaatttacaaaaacccagctacaaattcaaaaacgaatatggaaa |
39176585 |
T |
|
| Q |
325 |
tcgatttttccaattaaatcgattttaatatggaatcggcccacgactgcctatgacttcccatgagtccatgaccataccatatttgattgttaagaca |
424 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39176584 |
tcgatttttccaattaaatcgattttaatatggaat----------cagcctatgacggcccatgagtccatgaccataccatatttgattgttaagaca |
39176495 |
T |
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| Q |
425 |
gaataaataaacgtaacctctcgggtcaatccactccacctcattttcatattcttcg |
482 |
Q |
| |
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||||||||| || |||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
39176494 |
gaataaatatacataacctctcgggtcgatccactccacctcattttcattttcttcg |
39176437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 447
Target Start/End: Original strand, 39174305 - 39174368
Alignment:
| Q |
384 |
cccatgagtccatgaccataccatatttgattgttaagacagaataaataaacgtaacctctcg |
447 |
Q |
| |
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||||||||||||| ||||||| |||||| ||||||| ||| |||||| ||| ||||||||||| |
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| T |
39174305 |
cccatgagtccatcaccatactgtatttgtttgttaaaacaaaataaacaaatgtaacctctcg |
39174368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8938000 - 8938033
Alignment:
| Q |
1 |
agatcttctaacaggtgtaagcttcgcttctggt |
34 |
Q |
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| T |
8938000 |
agatcttctaacaggtgtaagctttgcttctggt |
8938033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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