View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7710_low_19 (Length: 469)
Name: NF7710_low_19
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 20 - 438
Target Start/End: Original strand, 20576711 - 20577147
Alignment:
| Q |
20 |
aagcaggaggaaattctcaaactggaagaagccgctttcgatagttatgaggatggatttgagaatgctcttcagaagattcaggcacttcacactgaca |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20576711 |
aagctggaggaaattctcaaactggaagacaccgctttcgatagttatgaggatggatttgagaatgctcttcagcagattcaggcacttcacactgaca |
20576810 |
T |
|
| Q |
120 |
ttgatctttctggagctgattcgagtatgcgtgtcctaggaggtcggattgtagatcctctagcgaaagctccttttggtgttgtgacaagtgttggttc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20576811 |
ttgatctttctggagctgattcgagtatgcgtgtcctaggaggtcggattgtagatcctctagcgaaagctccttttggtgttgtgacaagtgttggttc |
20576910 |
T |
|
| Q |
220 |
atgtacacaaagtgagcattaaagtttgg------------------tatgttctacaattatttctgttttcttctatggtttcgagtagttgtacatg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20576911 |
atgtacacaaagtgagcattaaagtttggttgttcgacttgatttgatatgttatacaattatttctgttttcttctatggtttcaagtagttgtacatg |
20577010 |
T |
|
| Q |
302 |
taactaaacttacaacagtctcttagcttaagatataattccaattgtcagctaaacaagtttgtgaactctgagtcagtcatagattataatgaagttt |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20577011 |
taactaaacttacaacagtctcttagcttaagatataattccaattgtcagctaaacaagtttgtgaactctgagtcagtcatagattataatgaagttt |
20577110 |
T |
|
| Q |
402 |
gatgaagttaatattaacatattttaaagggattctt |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20577111 |
gatgaagttaatattaacatattttaaagggattctt |
20577147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University