View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7710_low_21 (Length: 463)
Name: NF7710_low_21
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 34 - 447
Target Start/End: Complemental strand, 39857913 - 39857500
Alignment:
| Q |
34 |
cagagagtcaaatatagtattttcatttcattttcacaataaggttatgatatgtataagattgagagttgtcctagtcattgtcatgtttccactatct |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39857913 |
cagagagtcaaatatagtattttcatttcattttcacaataaggttatgatatgtataagattgagagttgtcctagtcattgtcatgtttccactatct |
39857814 |
T |
|
| Q |
134 |
aaccactaatgtgcgcaccatgtatatcagaaacactattccacccttcaccggaatgaatttttgctatattatcattctgttttcattcttcttgttt |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39857813 |
aaccactaatgtgcgcaccatgtatatcagaaacactattccacccttcaccggaatgaatttttgctatattatcattctgttttcattcttcttgttt |
39857714 |
T |
|
| Q |
234 |
cattatttgtggcacccttcttatcattattatattattatacattatagtagggtattaagttggttcgagtaaaacttgctctaaagtggacttgaag |
333 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39857713 |
cattatttatggcacccttcttatcattattatattattatacattctagtagggtattgtgttggttcgagtagaacttgctctaaagtggacttgaag |
39857614 |
T |
|
| Q |
334 |
acgacaattagagttgacttgatgtgatggaggatgatgctgcttcatatgaagcatggacacaaacatgttcaagtgatatgacatggatattgacact |
433 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
39857613 |
acgacagttagagttgacttgatgtgatggaggatgatgctgcttcatatgaagcatggacattgacatgttcaagtgacatgacatggatattgacact |
39857514 |
T |
|
| Q |
434 |
tcaatatcaataat |
447 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
39857513 |
tcaatatcaataat |
39857500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University