View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_23 (Length: 455)
Name: NF7710_low_23
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_23 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 294149 - 293686
Alignment:
| Q |
1 |
tgttcgaactgaccccaacatatcaaaa-tgtttctacagttttttaccatctgaattgtatttgtcaaac------cgcacannnnnnnnnnattaggt |
93 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
294149 |
tgttcgaactgaccccaacatatcaaaaatgtctctacagttttttaccatctgaattgtatttgtcaaactcaaaccgcacattttttttt-attaggt |
294051 |
T |
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| Q |
94 |
gttttgatatatgttaattttaaagaatagttatgtttatcataaaatttgatgtttctttatggatatggatataataataata---gtgagattcatc |
190 |
Q |
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| T |
294050 |
gttttgatatatgttaattttaaagaatagttatgtttatcataaaatttgatgtttctttatggatatggatataataataataatagtgagattcatc |
293951 |
T |
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| Q |
191 |
ttaaggaatgttgtcatatctaatgtaataggaataggagtggttggaaataattagttgtacttgtcccacaaggcactattcatgtgacttaaaggtt |
290 |
Q |
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| T |
293950 |
ttaaggaatgttgtcatatctaatgtaataggaataggagtggttggaaataattggttgcacttgtcccacaaggcactattcatgtgacttaaaggtt |
293851 |
T |
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| Q |
291 |
tggattaactacaacaacctagactacatgagatgagatgaaatccatccttaaatatgagtgttacttttatgttttaaaagcaaagcatttatttata |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
293850 |
tggattaactacaacaacctagactacatgagatgagatgaaattcatccttaaatatgagtgttacttttatgttttaaaagcaaagcatttatttaaa |
293751 |
T |
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| Q |
391 |
attcttgttcagcctcttgagacagcaaggcccattattcttttttatttctttaagtttgcttc |
455 |
Q |
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| T |
293750 |
attcttgttctgcctcttgagacagcaaggcccattattcttttttatttctttaagtttgcttc |
293686 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 4210672 - 4210706
Alignment:
| Q |
26 |
aaatgtttctacagttttttaccatctgaattgta |
60 |
Q |
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| T |
4210672 |
aaatgtttctgcagttttttaccatctgaattgta |
4210706 |
T |
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