View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_25 (Length: 441)
Name: NF7710_low_25
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 20 - 428
Target Start/End: Complemental strand, 3132005 - 3131597
Alignment:
| Q |
20 |
aaaggtatgtatatttatcaccaaatgttgttgaatatatccgttttgatttttgccacctgatttactttttatctcaaagataacaaatatgtttgtt |
119 |
Q |
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| T |
3132005 |
aaaggtatgtatatttatcaccaaatgttgttgaatatatccgttttgatttttgccacctgatttactttttatctcaaagataacaaatatgtttgtt |
3131906 |
T |
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| Q |
120 |
tgtttgcgttactggttctcctcataggttgaagatgagaaatctaaaacgaagtttgattcaggtcttaaactcacttccgatcacctaaggtatgtcg |
219 |
Q |
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| T |
3131905 |
tgtttgcgttactggttctcctcataggctgaagatgagaaatctaaaacgaagtttgattcaggtcttaaactcacttccgatcacctaaggtatgtcg |
3131806 |
T |
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| Q |
220 |
atattatcctcatgttctggatttgttgattttcaacacagtaaaagtattgccttcaccacttttattacttattgttatgtctgtgtcgttgcagcta |
319 |
Q |
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| T |
3131805 |
atattatcctcatgttctggatttgttgattttcaacacagtagaagtattgccttcaccacttttattacttattgttatgtctgtgtcgttgcagcta |
3131706 |
T |
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| Q |
320 |
tctagttgatgccatctacaaaaaaccagttataattcacagttatccaaaagaagctaaaccgttctatgttcgtgttaatgatgataaaactgtagct |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3131705 |
tctagttgatgccatctacaaaaaaccagttataattcacagttatccaaaagaagctaaaccgttctatgttcgtgttaatgatgataaaactgtagct |
3131606 |
T |
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| Q |
420 |
gcgtttgat |
428 |
Q |
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| T |
3131605 |
gcgtttgat |
3131597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 320 - 428
Target Start/End: Complemental strand, 3128144 - 3128034
Alignment:
| Q |
320 |
tctagttgatgccatctacaaaaaaccagttataattcacagttatccaaaagaagctaaaccgttctatgt----tcgtgttaatgatgataaaactgt |
415 |
Q |
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||||| |||||||||||||||||| ||| |||||||| | |||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| |
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| T |
3128144 |
tctagctgatgccatctacaaaaagccacttataattga--gttatccaaaagaagctaaaccattctatgttcgttcgtgttaatgatgataaaaatgt |
3128047 |
T |
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| Q |
416 |
agctgcgtttgat |
428 |
Q |
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|| || |||||| |
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| T |
3128046 |
ggcagcatttgat |
3128034 |
T |
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