View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_27 (Length: 436)
Name: NF7710_low_27
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 41351601 - 41352014
Alignment:
| Q |
19 |
cttccgtctccatcacaatcggattgtgtagatgacaatatctccgaggtaatttgaatcctcctgtcctcgtgcacacatacacaccaaattcttgtgt |
118 |
Q |
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| T |
41351601 |
cttccgtctccatcccaatcagattgtgtagatgacaatatctccgaggtaatttgaatcctcctgtcctcgtgcacacatacacaccaaattcttgtgt |
41351700 |
T |
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| Q |
119 |
tttgcaattgaatttgaatttttgtgatgctatctgaatttatcatttgtttcaatcaaaggctgaaagatgattatttggccaagtttaaaatttgcat |
218 |
Q |
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| T |
41351701 |
tttgcaattgaatttgaatttttgtgatgctatctgaatttatcatttgtttcaatcaaaggctgaaagatgattatttggccaagtttaaaatttgcat |
41351800 |
T |
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| Q |
219 |
tataaatgtgatccaaaaaagaaatagcattctcattgtggaatatgatattatgcaggttagtgagtcagaattatgttgcatctgctttgagcaggta |
318 |
Q |
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| T |
41351801 |
tataaatgtgatccaaaaaagaaatagcattctcattgtggaatatgatattatgcaggttagtgagtcagaattatgttgcatctgctttgagcaggta |
41351900 |
T |
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| Q |
319 |
tgcacaattgaagttcagaattgtggtcaccaaatgtgtgcacaatgcacattagccctttgttgctacaacaaaccgaacccgacaactacttctataa |
418 |
Q |
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| T |
41351901 |
tgcacaattgaagttcagaattgtggtcaccaaatgtgtgcacaatgcacattagccctttgttgctacaacaaaccgaacccgacaactacttctataa |
41352000 |
T |
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| Q |
419 |
ctccaccagtttgt |
432 |
Q |
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| T |
41352001 |
ctccaccagtttgt |
41352014 |
T |
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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 36228854 - 36228910
Alignment:
| Q |
133 |
tgaatttttgtgatgctatctgaatttatcatttgtttcaatcaaaggctgaaagat |
189 |
Q |
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| T |
36228854 |
tgaatttttgtgatgctatctaaatttatcatttgtttcgatcaaaggctgagagat |
36228910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 274 - 369
Target Start/End: Original strand, 23714846 - 23714941
Alignment:
| Q |
274 |
caggttagtgagtcagaattatgttgcatctgctttgagcaggtatgcacaattgaagttcagaattgtggtcaccaaatgtgtgcacaatgcaca |
369 |
Q |
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| T |
23714846 |
caggttagcgagacggaattatgctgcatctgctttgagcaggtgtgtacaattgaggtccaagactgtggccaccagatgtgtgcacaatgcaca |
23714941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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