View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7710_low_28 (Length: 417)

Name: NF7710_low_28
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7710_low_28
NF7710_low_28
[»] chr2 (4 HSPs)
chr2 (17-387)||(34250025-34250395)
chr2 (200-242)||(38724013-38724055)
chr2 (323-387)||(34236785-34236849)
chr2 (208-240)||(28224846-28224878)
[»] chr8 (4 HSPs)
chr8 (145-240)||(42659073-42659168)
chr8 (202-242)||(39434513-39434553)
chr8 (212-242)||(25326158-25326188)
chr8 (200-232)||(44337194-44337226)
[»] chr1 (3 HSPs)
chr1 (145-237)||(48841248-48841340)
chr1 (157-239)||(5453942-5454024)
chr1 (145-243)||(47459526-47459623)
[»] chr4 (10 HSPs)
chr4 (151-240)||(12917895-12917984)
chr4 (181-239)||(41372270-41372328)
chr4 (145-241)||(23255558-23255654)
chr4 (203-247)||(53619425-53619469)
chr4 (157-240)||(3329842-3329925)
chr4 (182-237)||(28977296-28977351)
chr4 (145-240)||(50001092-50001187)
chr4 (208-238)||(9657469-9657499)
chr4 (148-225)||(23604951-23605028)
chr4 (189-238)||(55933670-55933719)
[»] chr3 (4 HSPs)
chr3 (145-242)||(26772602-26772699)
chr3 (145-225)||(39583395-39583475)
chr3 (145-240)||(38671046-38671141)
chr3 (189-231)||(50657232-50657274)
[»] chr6 (5 HSPs)
chr6 (145-239)||(17249471-17249565)
chr6 (204-240)||(32531073-32531109)
chr6 (182-240)||(33220914-33220972)
chr6 (200-240)||(7749327-7749367)
chr6 (188-229)||(357925-357966)
[»] chr7 (6 HSPs)
chr7 (157-238)||(38766172-38766253)
chr7 (188-239)||(28517496-28517547)
chr7 (182-240)||(36931905-36931963)
chr7 (182-238)||(38832150-38832206)
chr7 (148-224)||(40726649-40726725)
chr7 (145-252)||(45003063-45003169)
[»] chr5 (6 HSPs)
chr5 (208-245)||(27336536-27336573)
chr5 (145-237)||(430451-430543)
chr5 (145-237)||(25663198-25663290)
chr5 (183-239)||(35310295-35310351)
chr5 (182-232)||(33692255-33692305)
chr5 (200-237)||(2917582-2917619)


Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 34250025 - 34250395
Alignment:
Q  17 cacttagttcgagaggttattttctacagttgtgcgcataggatatatactgatccacaaaaaagaaaatgttagataatgtattattgtatgtctaatt 116  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34250025 cacttagttcgagaggttattttctacggttgtgcgcataggatatatactgatccacaaaaaagaaaatgttagataatgtactattgtatgtctaatt 34250124  T
Q  117 caaacaaaatatatgtctatatttaatatacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  34250125 caaacaaaatatatgtctatatttaatatacgaggattaattttgtcatccaaaaagatctaatagcgcaatttgttgtcggtttgcctcatattcatgt 34250224  T
Q  217 gtaagtaatattgatagtaaatattaaatttaaaaagaaacataatatctaataaaccgaccggtggcctatataagtcattcattccacagttgaagtc 316  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34250225 gtaagtaatattgatattaaatattaaatttaaaaagaaacataatatctaataaaccgaccggtggcctatataagtcattcattccacagttgaagtc 34250324  T
Q  317 taacatatcttgcttacttacattcccttgttgactgcaagaatggaacttaagcacatactcattttcat 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34250325 taacatatcttgcttacttacattcccttgttgactgcaagaatggaacttaagcacatactcattttcat 34250395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 38724013 - 38724055
Alignment:
Q  200 ttgcctcatattcatgtgtaagtaatattgatagtaaatatta 242  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  38724013 ttgcctcctatttatgtgtaagtaatattgatagtaaatatta 38724055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 34236785 - 34236849
Alignment:
Q  323 atcttgcttacttacattcccttgttgactgcaagaatggaacttaagcacatactcattttcat 387  Q
    ||||||||||||||| |||| ||||||| ||||||||||| | || ||||| | |||||||||||    
T  34236785 atcttgcttacttactttcctttgttgattgcaagaatgggatttcagcaccttctcattttcat 34236849  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 28224878 - 28224846
Alignment:
Q  208 tattcatgtgtaagtaatattgatagtaaatat 240  Q
    ||||||| |||||||||||||||||||||||||    
T  28224878 tattcatttgtaagtaatattgatagtaaatat 28224846  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 240
Target Start/End: Complemental strand, 42659168 - 42659073
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatat 240  Q
    ||||||||||||||||||||| |||||| ||||||  |   ||||||||||| | ||||||| ||||| |||||||||||||||||||||||||||    
T  42659168 tacgaggattaattttgtcatccaaaaaggtctaacggtataacttgttgtccgcttgcctcctattcttgtgtaagtaatattgatagtaaatat 42659073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 39434553 - 39434513
Alignment:
Q  202 gcctcatattcatgtgtaagtaatattgatagtaaatatta 242  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  39434553 gcctcctattcatgtgtaagtaatattgatagtaaatatta 39434513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 242
Target Start/End: Complemental strand, 25326188 - 25326158
Alignment:
Q  212 catgtgtaagtaatattgatagtaaatatta 242  Q
    |||||||||||||||||||||||||||||||    
T  25326188 catgtgtaagtaatattgatagtaaatatta 25326158  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 44337226 - 44337194
Alignment:
Q  200 ttgcctcatattcatgtgtaagtaatattgata 232  Q
    ||||||| |||||||||||||||||||||||||    
T  44337226 ttgcctcctattcatgtgtaagtaatattgata 44337194  T

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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 48841248 - 48841340
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaa 237  Q
    |||||||||| ||||||  || |||||| |||||  |||||||||||||||| | || |||||||||||||||||||||||||| ||||||||    
T  48841248 tacgaggattgattttgcaatccaaaaaagtctagcagcgcaacttgttgtccgcttacctcatattcatgtgtaagtaatattaatagtaaa 48841340  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 5454024 - 5453942
Alignment:
Q  157 ttttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaata 239  Q
    ||||||||| |||||| |||||   ||||| ||||||| | | ||||||| ||||||||||||||||||||||||||||||||    
T  5454024 ttttgtcatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattgatagtaaata 5453942  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 243
Target Start/End: Complemental strand, 47459623 - 47459526
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatattaa 243  Q
    |||||| ||| |||| | |||||||||| |||||   ||||| ||||||||| | ||| ||| |||||||||||||| ||||||||| |||||||||||    
T  47459623 tacgagaattgatttagccattcaaaaaggtctagc-gcgcagcttgttgtctgcttggctcctattcatgtgtaaggaatattgatcgtaaatattaa 47459526  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 12917984 - 12917895
Alignment:
Q  151 gattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatat 240  Q
    |||| |||||||||| |||||| ||||||  || |||||| ||||| | ||||||| |||||||| ||||||||||||||||||||||||    
T  12917984 gattgattttgtcatccaaaaaggtctaacggcacaacttattgtctgcttgcctcttattcatgagtaagtaatattgatagtaaatat 12917895  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 41372270 - 41372328
Alignment:
Q  181 agcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaata 239  Q
    |||||||||||||||| | ||||||| |||||||||||||||||||||||||| |||||    
T  41372270 agcgcaacttgttgtctgcttgcctcctattcatgtgtaagtaatattgatagaaaata 41372328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 23255654 - 23255558
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatatt 241  Q
    |||||||||| |||||| ||| || ||| |||||   ||||| ||||||||| | || |||| ||||||| ||| ||||||||||||||||||||||    
T  23255654 tacgaggattgattttgccatccagaaaagtctagcggcgcagcttgttgtccgcttacctcctattcatatgtgagtaatattgatagtaaatatt 23255558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 53619469 - 53619425
Alignment:
Q  203 cctcatattcatgtgtaagtaatattgatagtaaatattaaattt 247  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  53619469 cctcctattcatgtgtaagtaatattgatagtaaatattatattt 53619425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 3329925 - 3329842
Alignment:
Q  157 ttttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatat 240  Q
    ||||| ||| |||||| |||||   ||||| ||||||| | | ||||||| |||||| ||||||||||||||||||||||||||    
T  3329925 ttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcacgtgtaagtaatattgatagtaaatat 3329842  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 28977296 - 28977351
Alignment:
Q  182 gcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaa 237  Q
    |||||||||||| || ||||||||| |||||||| |||| ||||||||||||||||    
T  28977296 gcgcaacttgttatcagtttgcctcctattcatgcgtaattaatattgatagtaaa 28977351  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 50001092 - 50001187
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatat 240  Q
    ||||| |||| |||||| ||| ||||||  ||||   ||||| ||||||| | | ||||||| ||||||||||||||||||||| |||||||||||    
T  50001092 tacgaagattgattttgccatccaaaaagatctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattaatagtaaatat 50001187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 238
Target Start/End: Original strand, 9657469 - 9657499
Alignment:
Q  208 tattcatgtgtaagtaatattgatagtaaat 238  Q
    |||||||||||||||||||||||||||||||    
T  9657469 tattcatgtgtaagtaatattgatagtaaat 9657499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 23605028 - 23604951
Alignment:
Q  148 gaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaat 225  Q
    ||||||| |||||||||| |||||| |||||   ||||||||||||||| | ||| ||  ||||||||||||| ||||    
T  23605028 gaggattgattttgtcatccaaaaaggtctagcggcgcaacttgttgtccggttgtcttctattcatgtgtaaataat 23604951  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 55933670 - 55933719
Alignment:
Q  189 ttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaat 238  Q
    |||||||| | ||||||| |||||||||| |||||||||||||| |||||    
T  55933670 ttgttgtccgcttgcctcctattcatgtgcaagtaatattgatattaaat 55933719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 26772699 - 26772602
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatatta 242  Q
    |||||||||| |||||| ||| |||||| |||||   ||||| ||||||| | | ||||||| ||||||||||||||||||||||||| |||||||||    
T  26772699 tacgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattgataataaatatta 26772602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 39583395 - 39583475
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaat 225  Q
    |||||||||| |||||| ||| |||||| |||||   ||||||||||||||| | |||| |  ||||||||||||||||||    
T  39583395 tacgaggattgattttgccatccaaaaaggtctagcggcgcaacttgttgtctgcttgctttctattcatgtgtaagtaat 39583475  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 38671046 - 38671141
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatat 240  Q
    ||||||||||  ||||| |||  ||||| |||||   ||||| ||||||||| | || |||| |||| |||||||| |||||||||||||||||||    
T  38671046 tacgaggattggttttgccatctaaaaaagtctagcggcgcagcttgttgtccgcttacctcctatttatgtgtaaataatattgatagtaaatat 38671141  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 50657274 - 50657232
Alignment:
Q  189 ttgttgtcggtttgcctcatattcatgtgtaagtaatattgat 231  Q
    |||||||| | ||| ||||||||||||||||||||||||||||    
T  50657274 ttgttgtcagcttgtctcatattcatgtgtaagtaatattgat 50657232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 17249471 - 17249565
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaata 239  Q
    ||||||||||  ||||| ||| |||||| |||||   ||||| ||||||| | | ||||||| ||||||||| ||||||||||||||||||||||    
T  17249471 tacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaatattgatagtaaata 17249565  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 32531073 - 32531109
Alignment:
Q  204 ctcatattcatgtgtaagtaatattgatagtaaatat 240  Q
    |||||||||||||||||||||||||||||||||||||    
T  32531073 ctcatattcatgtgtaagtaatattgatagtaaatat 32531109  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 33220914 - 33220972
Alignment:
Q  182 gcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatat 240  Q
    ||||| ||||||| | | ||||||| |||||||||||||||||||||||||||| ||||    
T  33220914 gcgcagcttgttggccgcttgcctcctattcatgtgtaagtaatattgatagtatatat 33220972  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 7749367 - 7749327
Alignment:
Q  200 ttgcctcatattcatgtgtaagtaatattgatagtaaatat 240  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  7749367 ttgcctcctattcatgtgtaactaatattgatagtaaatat 7749327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 357925 - 357966
Alignment:
Q  188 cttgttgtcggtttgcctcatattcatgtgtaagtaatattg 229  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||    
T  357925 cttgttgtcggtttgtctcctattcatatgtaagtaatattg 357966  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 38766253 - 38766172
Alignment:
Q  157 ttttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaat 238  Q
    ||||| ||| |||||| |||||   ||||| ||||||| | | ||||||| |||||||||||||||||||||||||||||||    
T  38766253 ttttgccatccaaaaaggtctagctgcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattgatagtaaat 38766172  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 28517496 - 28517547
Alignment:
Q  188 cttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaata 239  Q
    ||||||| | || |||||| ||||||||||||||||||||||||||||||||    
T  28517496 cttgttgcccgtctgcctcctattcatgtgtaagtaatattgatagtaaata 28517547  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 36931905 - 36931963
Alignment:
Q  182 gcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatat 240  Q
    ||||| |||||| || | ||||||| ||||||| |||||||||||||||||||||||||    
T  36931905 gcgcagcttgttatccgcttgcctcctattcatatgtaagtaatattgatagtaaatat 36931963  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 38832206 - 38832150
Alignment:
Q  182 gcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaat 238  Q
    ||||| ||||||| | | ||||||| ||||||| |||||||||||||||||||||||    
T  38832206 gcgcagcttgttgcccgcttgcctcctattcatatgtaagtaatattgatagtaaat 38832150  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 40726649 - 40726725
Alignment:
Q  148 gaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaa 224  Q
    ||||||| |||||| ||| |||||| |||||| | |||| ||||||| | | ||||||| |||||||||||||||||    
T  40726649 gaggattgattttgccatccaaaaatgtctaacatcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaa 40726725  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 45003063 - 45003169
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatattaaa 244  Q
    ||||| |||| |||||| ||| |||||| |||||   ||||| ||| ||||| | ||||||| ||||||||||||||||||||  || |||||||||| |    
T  45003063 tacgaagattgattttgccatccaaaaaggtctagcggcgcagcttattgtccgcttgcctcctattcatgtgtaagtaatatcaat-gtaaatattata 45003161  T
Q  245 tttaaaaa 252  Q
    | ||||||    
T  45003162 tgtaaaaa 45003169  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 27336573 - 27336536
Alignment:
Q  208 tattcatgtgtaagtaatattgatagtaaatattaaat 245  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27336573 tattcatgtgtaagtaatattgatagtaaatattaaat 27336536  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 430543 - 430451
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaa 237  Q
    |||||||||| ||| || ||| |||||| |||||   | ||| ||||| ||| | ||||||| |||||||||| |||||||||||||||||||    
T  430543 tacgaggattgattatgccatccaaaaaggtctatcggtgcagcttgtngtctgcttgcctcctattcatgtgcaagtaatattgatagtaaa 430451  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 25663198 - 25663290
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaa 237  Q
    ||||||||||   |||||||| |||||| ||||||   |||| |||||||   ||||||||| | || |||||||||||||||||||||||||    
T  25663198 tacgaggattggctttgtcatccaaaaaggtctaacgacgcagcttgttgctcgtttgcctcctttttatgtgtaagtaatattgatagtaaa 25663290  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 35310351 - 35310295
Alignment:
Q  183 cgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaata 239  Q
    |||| ||||||| | | ||||||| ||||||||||||||||||||||||||| ||||    
T  35310351 cgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattgatagttaata 35310295  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 33692255 - 33692305
Alignment:
Q  182 gcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgata 232  Q
    ||||| ||||||| | | ||||||| |||||||||||||||||||||||||    
T  33692255 gcgcagcttgttgcctgcttgcctcctattcatgtgtaagtaatattgata 33692305  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 2917582 - 2917619
Alignment:
Q  200 ttgcctcatattcatgtgtaagtaatattgatagtaaa 237  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  2917582 ttgcctcctattcatgtgtaggtaatattgatagtaaa 2917619  T

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