View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_3 (Length: 734)
Name: NF7710_low_3
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 20 - 491
Target Start/End: Original strand, 49005360 - 49005830
Alignment:
| Q |
20 |
ttgagctttgctaaagcctagcatattttaaagggttgatattgagaatgagattttagtagcagggtttcaaacgtctactgattaaatgaaaatttat |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49005360 |
ttgagctttgctaaagcctagcatattttaaagggttaatattgagaatgagattttagtagcaggttttcaaacgtctactgattaaatgaaaatttat |
49005459 |
T |
|
| Q |
120 |
gaggttttccaaataatctttgttagtgaacattgaattaattatgtttgactctggtttatactggagtctttgctatagttctctgtaaatcagtaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49005460 |
gaggttttccaaataatctttgttagtgaacattgaattaattatgtttgactctggtttatactggagtctttgctatagttctctgtaaatcagtaat |
49005559 |
T |
|
| Q |
220 |
gagtcaccgaagacataaggatgaaaatattcacggaattgattgtgatcaaactcatgtgtggtaacatcatgttccaacgtctgaaaagnnnnnnnnt |
319 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | |
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| T |
49005560 |
gagtcactgaagacataaggataaaaatattcacggaattgattgtgatcaaactcatgtgtagtaacatcatgttccaacttctgaaaag-aaaaaaat |
49005658 |
T |
|
| Q |
320 |
aacaagtttaaattacgttaactatgaaaagnnnnnnntgttagtgttgttgccaataaatattgaatcaactcgtaaagagttgattcacttattgcaa |
419 |
Q |
| |
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||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||| |
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| T |
49005659 |
aactagtttaaattacgttaactatgaaaagaaaaaaatgttagtgttgttgccaataaatattgaagcaactcgtaaggagttgattcacttatcgcaa |
49005758 |
T |
|
| Q |
420 |
ggctttgatggctatgaataagtaactttgtaagtgttttttcagtttttaaagttcggtcttattctaata |
491 |
Q |
| |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
49005759 |
ggctttgatggctatcaataagtaactttgtaagcgttttttcagtttttaaagttcggtcttattttaata |
49005830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 505 - 658
Target Start/End: Original strand, 49006033 - 49006190
Alignment:
| Q |
505 |
acaattttgaaaaattgtgctaaataacatttctgaaattaaaatgagggtttaaaaatggttacatcaagcagcctcc----ctgacccccgcggagca |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49006033 |
acaattttgaaaaattgtgctaaataacatttctgaaattaaaatgagggtttaaaaatggttacatcaagcagcctccctgactgacccccgcggagca |
49006132 |
T |
|
| Q |
601 |
ttctcctcttctccactatgccgtataacactctactccacctcagcattctcccacc |
658 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49006133 |
ttctcctcttctccactatgccgtataacactctactccacctcagcattctcccacc |
49006190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 4e-34; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 38161378 - 38161484
Alignment:
| Q |
20 |
ttgagctttgctaaagcctagcatattttaaagggttgatattgagaatgagattttagtagcagggtttcaaacgtctactgattaaatgaaaatttat |
119 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| | |||| ||||||||||||||||||||| ||||| |
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| T |
38161378 |
ttgagctttgctaaatcctagcatattttaaagggttgatattgagaatgacattttaatagcatgttttccaacgtctactgattaaatgaatgtttat |
38161477 |
T |
|
| Q |
120 |
gaggttt |
126 |
Q |
| |
|
||||||| |
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|
| T |
38161478 |
gaggttt |
38161484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 38117600 - 38117701
Alignment:
| Q |
20 |
ttgagctttgctaaagcctagcatattttaaagggttgatattgagaatgagattttagtagcagggtttcaaacgtctactgattaaatgaaaatttat |
119 |
Q |
| |
|
||||||||||||| ||||| |||| ||||| |||||||||||||||| || |||||||||||| |||| |||||||||||||||| ||||||||||| |
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| T |
38117600 |
ttgagctttgctatagcctggcattttttagagggttgatattgaga-tg----tttagtagcaggttttccaacgtctactgattaagtgaaaatttat |
38117694 |
T |
|
| Q |
120 |
gaggttt |
126 |
Q |
| |
|
||||||| |
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|
| T |
38117695 |
gaggttt |
38117701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 574 - 662
Target Start/End: Original strand, 38178425 - 38178515
Alignment:
| Q |
574 |
agcagcctccctgacccccgcggagcat--tctcctcttctccactatgccgtataacactctactccacctcagcattctcccacctagc |
662 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |||||||||| |||||| ||||||||| |
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| T |
38178425 |
agcaacctccctgacccccgcggagcatattctcctcttctccaccgtgccgtctaacactctcctccacctcaacattcttccacctagc |
38178515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 38139823 - 38139913
Alignment:
| Q |
20 |
ttgagctttgctaaagcctagcatattttaaagggttgatattgagaatgagattttagtagcagggtttcaaacgtctactgattaaatgaa |
112 |
Q |
| |
|
|||||||||||||||| | |||| ||| ||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
38139823 |
ttgagctttgctaaagatttgcattttt--aagggttactattgagaatgagattttagtagcaggttttccaacgtctactgattaaatgaa |
38139913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 214 - 282
Target Start/End: Original strand, 38140078 - 38140145
Alignment:
| Q |
214 |
agtaatgagtcaccgaagacataaggat-gaaaatattcacggaattgattgtgatcaaactcatgtgtg |
282 |
Q |
| |
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||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |
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| T |
38140078 |
agtaatgagtcactgaagacataaggataaaaaatattcac--agttgattgtgatcaaactcatgtgtg |
38140145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 530 - 573
Target Start/End: Original strand, 38178340 - 38178383
Alignment:
| Q |
530 |
aacatttctgaaattaaaatgagggtttaaaaatggttacatca |
573 |
Q |
| |
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||||||| ||||||||||||||||||||| |||||||||||||| |
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|
| T |
38178340 |
aacatttgtgaaattaaaatgagggtttagaaatggttacatca |
38178383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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