View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_30 (Length: 413)
Name: NF7710_low_30
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 368
Target Start/End: Complemental strand, 42224702 - 42224353
Alignment:
| Q |
13 |
ttggtgttttacgagaaggataagaggaggccaattttgaagaacactgatccaaggtgttatgatcttcactactcgcaattcacttttcaaagtaatg |
112 |
Q |
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| T |
42224702 |
ttggtgttttacgagaaggataagaggaggccaattttgaagaacactgatccaaggtgttatgatcttcactactcgcaattcactttccaaagtaatg |
42224603 |
T |
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| Q |
113 |
acatcttgctaaaatctttcccttaattctatgttttgagctgaaataatgttctgtttttcattcatggactgattattttggttctcattttctcaca |
212 |
Q |
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| T |
42224602 |
acatcttgctaaaa--tttcccttaattctatgtttggagctgaaataatgttctgtttttcattcatggactgattattttggttctcattttcaaaca |
42224505 |
T |
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| Q |
213 |
cacaatattcatattcattgtgtaaactatataatcatgatttaaagaatcgaaacataacattgaggtgaaaat--nnnnnnntatataatcacgattt |
310 |
Q |
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| T |
42224504 |
caca------atattcattgtgtaaactatataatcatgatttaaagaatcgaaacataacattgaggtgaaaataaaataaaaaatataatcacgattt |
42224411 |
T |
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| Q |
311 |
caagttatattcaaagttgcatgttatttcattctaatcttgaacacaactgccaaaa |
368 |
Q |
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| T |
42224410 |
caagttatattcaaagttgcatgttatttcattctaatcttgaacacaactgccaaaa |
42224353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 393
Target Start/End: Complemental strand, 42224334 - 42224305
Alignment:
| Q |
364 |
caaaaggataatggttcacggttacaagtg |
393 |
Q |
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| T |
42224334 |
caaaaggataatggttcacggttacaagtg |
42224305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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