View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_34 (Length: 373)
Name: NF7710_low_34
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 39173055 - 39173425
Alignment:
| Q |
1 |
atgataacagtgaatagtttcacttttagcattcttatagctggacaattttcttttgttgactataaaccattaacttcttgacctttattaacacaat |
100 |
Q |
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| T |
39173055 |
atgataacaatgaatagtttcacttttagcattcttatagctggacaattttcttttgttgactataaaccattaacttcttgacctttattgacacaat |
39173154 |
T |
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| Q |
101 |
tgagttttactccggtagtctttaacggatcactcattaataatgcatatatgcctctagcttggattcaattcgtcttcttgtcgagatttccttcctc |
200 |
Q |
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| T |
39173155 |
tgagttttactccggtagtctttaacggatcactcattaataatgcatatatgcctctagcttggattcaattcgtcttcttgtcgagatttccttcctc |
39173254 |
T |
|
| Q |
201 |
ccattttctgaagtgtttatagtaatatggaaattgatcatgttagttannnnnnnnnncttatgattaatttagtttccatttttgagagattctctct |
300 |
Q |
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| T |
39173255 |
ccattttctgtagtgtttatagtaatatggaaattcatcatgttagtta-tttttttttcttatgattaatttagtttccatttttgagagattctctct |
39173353 |
T |
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| Q |
301 |
tgcatataag----------------ttttgagaggaagtttgtacacctattgtaatcacatgattttaat |
356 |
Q |
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| T |
39173354 |
tgcatataagtttgtacgcctattttttttgagaggaagtttgtacacctattgtaatcacatgattttaat |
39173425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 39176956 - 39177212
Alignment:
| Q |
1 |
atgataacagtgaatagtttcacttttagcattcttatagctggacaattttcttttgttgactataaaccattaacttcttgacctttattaacacaat |
100 |
Q |
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||||||||| |||||| | | ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| |||| | |
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| T |
39176956 |
atgataacaatgaatactattacttttaacattcttatagctggacaattttcttttgttgactatattctattaacttcttgaactttattgacaccgt |
39177055 |
T |
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| Q |
101 |
tgagttttactccggtagtctttaacggatcactcattaataa-------------tgcatatatgcctctagcttggattcaattcgtcttcttgtcga |
187 |
Q |
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| T |
39177056 |
tgagttttactcc-gaagtctttaacggatcactcattaataatgcataattatactgcatatacgcctctagcttggattcaattcgtcctcttgtcga |
39177154 |
T |
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| Q |
188 |
gatttccttcctcccattttctgaagtgtttatagtaatatggaaattgatcatgtta |
245 |
Q |
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||||||||| ||||||||||||| |||||||||||||||| || |||||||||||||| |
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| T |
39177155 |
gatttccttgctcccattttctgtagtgtttatagtaatagggcaattgatcatgtta |
39177212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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