View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_35 (Length: 367)
Name: NF7710_low_35
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 22364046 - 22363694
Alignment:
| Q |
1 |
aaaaaatagtggaccgatttgtggagaacgcagtgaaatctctaatcatcaggtttttatttctttcctcatatgttttatatatcactcttttacatag |
100 |
Q |
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| T |
22364046 |
aaaaaatagtggaccgatttgtggagaacgcagtgagatctctaatcatcaggtttttatttctttccttgtatgttttatatatcactcttttacatag |
22363947 |
T |
|
| Q |
101 |
tgttagctaaattctctaattgtcttctgnnnnnnnatttcttatgtcataagttttatatactactctttaccatagtgttaactaaattctat-attg |
199 |
Q |
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| T |
22363946 |
tgttaactaaattctctaattgtcttctgtttttttatttcttatgtcataagttttatatactactctttaccatagtgttaactaaattctatgattg |
22363847 |
T |
|
| Q |
200 |
tcttcttgcttacattttaaaggtttttaatttcattaactaaacaattataattttcttgaatcggtgcaacttgagaaaggaggcattagatagctga |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22363846 |
tcttcttgcttacattttaaaggtttttaatttcattaactaaacaattataattttcttgaatcggtgcaacttgagaaaggaggcattagatagctga |
22363747 |
T |
|
| Q |
300 |
tatttcaagagaatgtgcaaataacataaaacgggcgcatggtgagggataaa |
352 |
Q |
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| T |
22363746 |
tatttcaagagaatgtgcaaataacataaaacgggcgcatggtgagggataaa |
22363694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 45 - 326
Target Start/End: Complemental strand, 2788265 - 2787988
Alignment:
| Q |
45 |
atcatcaggtttttatttctttcctcatatgttttatatatcactcttttacatagtgttagctaaattctctaattgtcttctgnnnnnnnatttctta |
144 |
Q |
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| T |
2788265 |
atcataagatttttatttcttttgtcataagctttatatattactcttttacatagtgttaactaaactgtctgactgtcttatggttttttatctctta |
2788166 |
T |
|
| Q |
145 |
tgtcataagttttatatactactctttaccatagtgttaactaaattctat-attgtcttcttgcttacatttt-aaaggtttttaatttcattaactaa |
242 |
Q |
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||||||||| ||||||| | || || |||||| ||||||||||| ||||||||||||||| |||||| |||||||||||| |||||||||||| |
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| T |
2788165 |
tgtcataagctttatatgcgac--------atggtgttatctaaattctatgattgtcttcttgcttgcatttttaaaggtttttaacttcattaactaa |
2788074 |
T |
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| Q |
243 |
acaattataattttcttgaatcggtgc-aacttgagaaaggaggcattagatagctgatat-ttcaagagaatgtgcaaataacat |
326 |
Q |
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| T |
2788073 |
agaattgtagttttcttgaatcggtgcaaacttgagaaaggaggctttagatagctgagatattcaagagaatgtgcaaataacat |
2787988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 23098501 - 23098424
Alignment:
| Q |
219 |
aaggtttttaatttcattaactaaacaattataattttcttgaatcggtgcaa-cttgagaaaggaggcattagatag |
295 |
Q |
| |
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|||||||||||||||||||||| || || | || |||||| |||| | |||| |||||||||||||||||||||||| |
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| T |
23098501 |
aaggtttttaatttcattaactcaaaaaatgtagttttctcgaataagggcaaacttgagaaaggaggcattagatag |
23098424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 324
Target Start/End: Original strand, 22679407 - 22679517
Alignment:
| Q |
216 |
ttaaaggtttttaatttcattaactaaacaattataattttcttgaatcggtgcaa-cttgagaaaggaggcattagatagctgata-tttcaagagaat |
313 |
Q |
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|||||||| |||||||| ||||| |||| | | || ||||||||||| | |||| ||||| ||| |||||||||||||| ||| | ||||||||||| |
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| T |
22679407 |
ttaaaggtatttaattttattaagtaaaaagtagtagttttcttgaattagagcaaacttgataaatgaggcattagatagttgaaattttcaagagaag |
22679506 |
T |
|
| Q |
314 |
gtgcaaataac |
324 |
Q |
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||||||||||| |
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| T |
22679507 |
gtgcaaataac |
22679517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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