View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_36 (Length: 355)
Name: NF7710_low_36
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_36 |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: scaffold0209 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 6 - 353
Target Start/End: Complemental strand, 10305 - 9958
Alignment:
| Q |
6 |
acaaatggttgatatgatactgttggattctgtcttcatcatggagttatttttaagagaaaacaaaaaatgggaacacaaagatgattatattataact |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10305 |
acaaatggttgatatgatactgttggattctgtcttcatcatggagttatttttaagagaaaacaaaaaatgggaacacaaagatgattatattataact |
10206 |
T |
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| Q |
106 |
caactttgtgtgagtagaagtattcaaagggatttgttgcttattgagaatcaacttccaatgtatgtcttggagaaactctatgacacagttgttccaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10205 |
caactttgtgtgagtagaagtattcaaagggatttgttgcttattgagaatcaacttccaatgtatgtcttggagaaactctatggcacagttgttccaa |
10106 |
T |
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| Q |
206 |
acaatgtcaaaaaccacaatctgtttaccatgctagcacatgactattttgcttcttgctaccctcatcaccaagagtcatcaaaaagaatgtttgaggn |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10105 |
acaatgtcaaaaaccacaatctgtttaccatgctagcacatgactattttgcttcttgctaccctcatcaccaagagtcatcaaaaagaatgtttgagga |
10006 |
T |
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| Q |
306 |
nnnnnnttgggagaaatcatttcattttactgatttgattaggtcttc |
353 |
Q |
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| T |
10005 |
aaaaaattgggagaaatcatttcattttactgatttgattaggtcttc |
9958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 6 - 353
Target Start/End: Complemental strand, 23759 - 23412
Alignment:
| Q |
6 |
acaaatggttgatatgatactgttggattctgtcttcatcatggagttatttttaagagaaaacaaaaaatgggaacacaaagatgattatattataact |
105 |
Q |
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| T |
23759 |
acaaatggttgatatgatactgttggattctgtcttcatcatggagttatttttaagagaaaacaaaaaatgggaacacaaagatgattatattataact |
23660 |
T |
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| Q |
106 |
caactttgtgtgagtagaagtattcaaagggatttgttgcttattgagaatcaacttccaatgtatgtcttggagaaactctatgacacagttgttccaa |
205 |
Q |
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| T |
23659 |
caactttgtgtgagtagaagtattcaaagggatttgttgcttattgagaatcaacttccaatgtatgtcttggagaaactctatggcacagttgttccaa |
23560 |
T |
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| Q |
206 |
acaatgtcaaaaaccacaatctgtttaccatgctagcacatgactattttgcttcttgctaccctcatcaccaagagtcatcaaaaagaatgtttgaggn |
305 |
Q |
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| T |
23559 |
acaatgtcaaaaaccacaatctgtttaccatgctagcacatgactattttgcttcttgctaccctcatcaccaagagtcatcaaaaagaatgtttgagga |
23460 |
T |
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| Q |
306 |
nnnnnnttgggagaaatcatttcattttactgatttgattaggtcttc |
353 |
Q |
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| T |
23459 |
aaaaaattgggagaaatcatttcattttactgatttgattaggtcttc |
23412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 7e-77; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 13 - 347
Target Start/End: Original strand, 606571 - 606905
Alignment:
| Q |
13 |
gttgatatgatactgttggattctgtcttcatcatggagttatttttaagagaaaacaaaaaatgggaacacaaagatgattatattataactcaacttt |
112 |
Q |
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|||||||||||||| |||||| |||| |||||||||||||| ||| | ||||| || |||| ||||||||||||||||||||| || ||||||||| || |
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| T |
606571 |
gttgatatgatactattggatgctgtgttcatcatggagttgtttcttagagagaaaaaaagatgggaacacaaagatgattacatagtaactcaacatt |
606670 |
T |
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| Q |
113 |
gtgtgagtagaagtattcaaagggatttgttgcttattgagaatcaacttccaatgtatgtcttggagaaactctatgacacagttgttccaaacaatgt |
212 |
Q |
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|||| || | |||||| ||| |||||||||||||| |||||||||| |||||||| ||||| || || ||| | |||||||| |||||||||| || ||| |
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| T |
606671 |
gtgtaagcaaaagtatccaacgggatttgttgcttcttgagaatcagcttccaatctatgtgttagaaaaattatatgacacggttgttccaagcagtgt |
606770 |
T |
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| Q |
213 |
caaaaaccacaatctgtttaccatgctagcacatgactattttgcttcttgctaccctcatcaccaagagtcatcaaaaagaatgtttgaggnnnnnnnt |
312 |
Q |
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| T |
606771 |
caaaaaccacaatcggtttatcaagctagcacatgagtattttgcatcttgttaccctcatcacaaggagtcatcagaaagaatgtttgaggaaaaaaat |
606870 |
T |
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| Q |
313 |
tgggagaaatcatttcattttactgatttgattag |
347 |
Q |
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| T |
606871 |
tgggagaaatcactccatttcaccgatttgattag |
606905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 11 - 347
Target Start/End: Complemental strand, 115908 - 115572
Alignment:
| Q |
11 |
tggttgatatgatactgttggattctgtcttcatcatggagttatttttaagagaaaacaaaaaatgggaacacaaagatgattatattataactcaact |
110 |
Q |
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||||||| |||||||| ||||||||||| |||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
115908 |
tggttgacatgatactattggattctgtgttcatcatggagttgtttctaagagaaaataaaaaatgggagcacaaagatgattatataataactcaact |
115809 |
T |
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| Q |
111 |
ttgtgtgagtagaagtattcaaagggatttgttgcttattgagaatcaacttccaatgtatgtcttggagaaactctatgacacagttgttccaaacaat |
210 |
Q |
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|||||| |||| |||||| || |||||||||||||| |||||||||| |||||||| ||||| ||||| ||||| ||||||||| ||||||||| ||| |
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| T |
115808 |
ttgtgtaagtaaaagtatccagcgggatttgttgcttcttgagaatcagcttccaatttatgtgttggaaaaactatatgacacaattgttccaagcaag |
115709 |
T |
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| Q |
211 |
gtcaaaaaccacaatctgtttaccatgctagcacatgactattttgcttcttgctaccctcatcaccaagagtcatcaaaaagaatgtttgaggnnnnnn |
310 |
Q |
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|||||||| |||||| |||| || ||| |||||||| |||||||| ||||| ||||| |||||| | || || ||| |||||| |||||||| |
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| T |
115708 |
gtcaaaaagcacaattggtttctcaagcttgcacatgagtattttgcatcttgttacccgcatcacaaggaatcttcagaaagaaagtttgaggcaaaga |
115609 |
T |
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| Q |
311 |
nttgggagaaatcatttcattttactgatttgattag |
347 |
Q |
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|||||||||||| |||||| |||||||||||||| |
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| T |
115608 |
aatgggagaaatcacgtcatttcactgatttgattag |
115572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 177881 - 178092
Alignment:
| Q |
13 |
gttgatatgatactgttggattctgtcttcatcatggagttatttttaagagaaaacaaaaaatgggaacacaaagatgattatattataactcaacttt |
112 |
Q |
| |
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||||| |||||| |||||||| ||| |||||||||||| | |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
177881 |
gttgacatgatattgttggatgttgtgttcatcatggagctgtttttaagagaagctaaaaaatgggaacacaaagatgattatatagtaactcaacttt |
177980 |
T |
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| Q |
113 |
gtgtgagtagaagtattcaaagggatttgttgcttattgagaatcaacttccaatgtatgtcttggagaaactctatgacacagttgttccaaacaatgt |
212 |
Q |
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|| | |||| || |||||| || ||||||||| |||||||||| ||||||| ||||| ||||| ||||| ||||||||||||||||||| || || |
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| T |
177981 |
gtttaagtaaaaatattcagcatgacttgttgcttcttgagaatcagattccaatttatgtgttggaaaaactatatgacacagttgttccaagcagtga |
178080 |
T |
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| Q |
213 |
caaaaaccacaa |
224 |
Q |
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|||||| ||||| |
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| T |
178081 |
caaaaagcacaa |
178092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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