View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_38 (Length: 344)
Name: NF7710_low_38
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 16957433 - 16957749
Alignment:
| Q |
20 |
aaaatgattcaggagagtgtggaatgctactactcaggccccatacgtatgacaaaaattaccctatttgtagagatacatatttaccacactgacagca |
119 |
Q |
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| T |
16957433 |
aaaatgattcaggagagtgtggaatgctactactcaggccccatacgtatgacaaaaattaccctatttgtagagatacatatttaccacactgacagca |
16957532 |
T |
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| Q |
120 |
ccgcacttcaatttgcatatatatatcaacttgtaaattctaaccctagttttgtaagaagnnnnnnntccttgctaattgaaactagaaacggtggacg |
219 |
Q |
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| T |
16957533 |
ccgcacttcaatttgcatatatatatcaacttgtaaattctaaccctagttttgtaagaagaaaaaaatccttgctaattgaaactagaaacggtggacg |
16957632 |
T |
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| Q |
220 |
gcatggaattatattatggccacatatgacaaggataatgtagtcagacatctcaaaccaataatttggtcacaagaacactcctttcatcttgtgggac |
319 |
Q |
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| T |
16957633 |
ggatggaattatattatggccacatatgacaaggataatgtagtcagacatctcaaaccaataatttggtcacaagaacactcctttcatcttgtgggac |
16957732 |
T |
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| Q |
320 |
tggatcatattcatttc |
336 |
Q |
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||||||||||||||||| |
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| T |
16957733 |
tggatcatattcatttc |
16957749 |
T |
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