View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_39 (Length: 334)
Name: NF7710_low_39
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_39 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 5317548 - 5317881
Alignment:
| Q |
1 |
tagataagaacaaatggacttcaagcttgacttatactgcagcattcttccctgtcagcatatttgcaatgatgcagttccctttatacgttgctatgaa |
100 |
Q |
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| T |
5317548 |
tagataagaacaaatggacttcaagcttgacttatactgcagcattcttccctgtcagcatatttgcaatgatgcagttccctttatacgttgctatgaa |
5317647 |
T |
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| Q |
101 |
aggatgtgtggtttcactccttaggagacttaagaagattgttcctcgtttcttcctcaatttgatcaaaaggagccagagggatagactctgggacatt |
200 |
Q |
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| T |
5317648 |
aggatgtgtggtttcactccttaggagacttaagaagattgttcctcgtttcttcctcaatttgatcaaaaggagccagagagatagactctgggacatt |
5317747 |
T |
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| Q |
201 |
taatatctaatttattttggttgtgtacatctggttaataacattttgctttttctaccattggacgtggaccttcataaaataagagcatagtgtcccc |
300 |
Q |
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| T |
5317748 |
taatatctaatttattttggttgtgtacatctggttaataacattttgctttttctaccattggacgtggaccttcataaaataagagcatagtgtcccc |
5317847 |
T |
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| Q |
301 |
ttaaatggttatccgtttcttgtaatttttggta |
334 |
Q |
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| T |
5317848 |
ttaaatggttatccgtttcttgtaatttttggta |
5317881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 175
Target Start/End: Complemental strand, 5328040 - 5327898
Alignment:
| Q |
30 |
acttatactgcagcattcttccctgtcagcatatttgcaatgatgcagttccctttatacgttgctatgaaaggatgtgtggtttcactccttaggagac |
129 |
Q |
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| T |
5328040 |
acttatagtgcagcatttttccccgtcagtatttttgcaatgatgcagttcactttatatgttgccatgaaaggatgtcttatggcactccttaggagcc |
5327941 |
T |
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| Q |
130 |
ttaagaagattgttcctcgtttcttcctcaatttgatcaaaaggag |
175 |
Q |
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| T |
5327940 |
ttaagaagattgttcctcgt---ttactcaagttgatcaaaaggag |
5327898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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