View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7710_low_40 (Length: 330)
Name: NF7710_low_40
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_40 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 4882824 - 4882568
Alignment:
| Q |
7 |
atggacatcaataggtgtagtaaaacaggttcaatctgtcagaccagtttgtttagtctgctatttttgaccagatgaacttccattttgaacttgtcgc |
106 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| || | |||||||||| | | ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4882824 |
atggacatcaataggtgtagtaaaataggttcaatctgtcggatcggtttgtttagcccgttatttttgaccagatgaacttccattttgaacttgccgc |
4882725 |
T |
|
| Q |
107 |
ttttagttgactcgtcccattaaacttgttgaaaaaatggggtggggcagagacagggccgacctgcatgccaactcgtcaacctgcaatttatttaann |
206 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4882724 |
ttttagttgactcgtcccgttaaacttgttgaaaaaatggggtggggcagagacagggccgacctgcatgccaactcgtcaacctgcaatttatttaa-t |
4882626 |
T |
|
| Q |
207 |
nnnnnnactaatgggtcaaacataatttaaagtgaagcgaccaaataactcattataa |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4882625 |
ttttttactaatgggtcaaacataatttaaagtgaagcgaccaaataactcattataa |
4882568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 4512893 - 4512853
Alignment:
| Q |
216 |
aatgggtcaaacataatttaaagtgaagcgaccaaataact |
256 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
4512893 |
aatgggttagacataatttaaagtgaagcgaccaaataact |
4512853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 264
Target Start/End: Original strand, 8799510 - 8799548
Alignment:
| Q |
226 |
acataatttaaagtgaagcgaccaaataactcattataa |
264 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
8799510 |
acataatttaaaatgaagtgaccaaataactcattataa |
8799548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University