View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_41 (Length: 323)
Name: NF7710_low_41
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_41 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 25 - 323
Target Start/End: Complemental strand, 19727606 - 19727293
Alignment:
| Q |
25 |
ctagttatcttttatggtttacatgcgttaccattaa------------gtgaggggttttagtctttttcttccttcttgcataggtgccttggaatgt |
112 |
Q |
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| T |
19727606 |
ctagttatcttttatggtttacatgcgttaccattaaacaaacgaaaaagtgaggggttttagtctttttcttccttcttgcataggtgcttaggaatgt |
19727507 |
T |
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| Q |
113 |
tttttctccgtgcattcctcttccaagccaactcatgattattcataaaataatcatcaatacagtaagttatggccatttctttttacttcttatcatg |
212 |
Q |
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| T |
19727506 |
tttttctctgtgcattcctcttccaagccaactcatgatt---cataaaataatcatcaattcagtaagttatggccatttctttttacttcttatcatg |
19727410 |
T |
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| Q |
213 |
ccatgtgtttgataatatgcctcaaaggcttctggatctg------nnnnnnnnnnnnnnnncgtgttatgtcatattacaaattacaaatatccaagct |
306 |
Q |
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| T |
19727409 |
ccatgtgtttgataatatgcctcaaaggcttctggatctgttttctttttctttttctttttcgtgttatatcatattacaaattacaaatatccaagct |
19727310 |
T |
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| Q |
307 |
tttattatgcaattgac |
323 |
Q |
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| T |
19727309 |
tttattatgcaattgac |
19727293 |
T |
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