View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_44 (Length: 313)
Name: NF7710_low_44
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_44 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 294
Target Start/End: Complemental strand, 59618 - 59335
Alignment:
| Q |
11 |
gtgttggattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctggtcgtgacc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59618 |
gtgttggattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctggtcgtgacc |
59519 |
T |
|
| Q |
111 |
tgactgattacatgatgaaaattctgacagaacgtggttattcttttaccacctcagcagagcgtgaaattgtgagggatatgaaggaaaagctggctta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59518 |
tgactgattacatgatgaaaattctgacagaacgtggttattcttttaccacctcagcagagcgtgaaattgtgagggatatgaaggaaaagctggctta |
59419 |
T |
|
| Q |
211 |
cattgcccttgactatgagcaagagctagagacatccaagaccagctctgcagtggagaagagctatgagttgcctgatgggca |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59418 |
cattgcccttgactatgagcaagagctagagacatccaagaccagctctgcagtggagaagagctatgagttgcctgatgggca |
59335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 8689575 - 8689855
Alignment:
| Q |
11 |
gtgttggattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctggtcgtgacc |
110 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||| |
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| T |
8689575 |
gtgttggattctggtgatggtgtcagccacactgtccccatctacgagggttatgcccttccacatgccatccttcgtcttgatctggctggtcgtgacc |
8689674 |
T |
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| Q |
111 |
tgactgattacatgatgaaaattctgacagaacgtggttattcttttaccacctcagcagagcgtgaaattgtgagggatatgaaggaaaagctggctta |
210 |
Q |
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| || |||| | ||||||| ||| |||| ||||||||||||||||||||||||||||||||||| |||||||| | || |||| |||||||| | || |
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| T |
8689675 |
ttaccgatttcttgatgaagattttgactgaacgtggttattcttttaccacctcagcagagcgagaaattgttcgtgacgtgaaagaaaagctttcata |
8689774 |
T |
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| Q |
211 |
cattgcccttgactatgagcaagagctagagacatccaagaccagctctgcagtggagaagagctatgagttgcctgatgg |
291 |
Q |
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||||||||||||||||||||||||||| |||||| ||| ||||||||| | || ||||||||||| || ||||||||||| |
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| T |
8689775 |
cattgcccttgactatgagcaagagctggagacagccaggaccagctcatccgtcgagaagagctacgaattgcctgatgg |
8689855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 294
Target Start/End: Complemental strand, 37050795 - 37050516
Alignment:
| Q |
15 |
tggattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctggtcgtgacctgac |
114 |
Q |
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|||||||||| |||||||| |||||||| || ||||| |||||||| ||||| || ||||| || ||||||||| | ||| | || |||||||| || || |
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| T |
37050795 |
tggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatcttgcaggtcgtgatctcac |
37050696 |
T |
|
| Q |
115 |
tgattacatgatgaaaattctgacagaacgtggttattcttttaccacctcagcagagcgtgaaattgtgagggatatgaaggaaaagctggcttacatt |
214 |
Q |
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|||| ||||||| ||| | || || ||||| || |||| ||||| ||||||||||| |||||||| |||||||||||||| || ||||||| ||| |
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| T |
37050695 |
tgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgtaagggatatgaaggagaaattggcttatatt |
37050596 |
T |
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| Q |
215 |
gcccttgactatgagcaagagctagagacatccaagaccagctctgcagtggagaagagctatgagttgcctgatgggca |
294 |
Q |
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|| ||||| || ||||| ||| | || || | || || ||||| || || ||||||| ||||||| | ||||||||||| |
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| T |
37050595 |
gctcttgattacgagcaggagttggaaactgctaaaactagctcagctgttgagaagacctatgagctacctgatgggca |
37050516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 41388158 - 41388434
Alignment:
| Q |
15 |
tggattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctggtcgtgacctgac |
114 |
Q |
| |
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|||| ||||| ||||||||||||||||| || || |||||||| || |||||||| ||||| || ||||||||||||||||| || || |||||||| || |
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| T |
41388158 |
tggactctggagatggtgtcagccacactgtaccaatctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcagggcgtgacctcac |
41388257 |
T |
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| Q |
115 |
tgattacatgatgaaaattctgacagaacgtggttattcttttaccacctcagcagagcgtgaaattgtgagggatatgaaggaaaagctggcttacatt |
214 |
Q |
| |
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|||| | |||||||||| || || || |||||||||||||| || ||| |||| |||||||||||||| || ||| |||||||||||||| |||| ||| |
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| T |
41388258 |
tgatgccttgatgaaaatccttaccgagcgtggttattctttcactaccacagccgagcgtgaaattgtaagagatgtgaaggaaaagctgtcttatatt |
41388357 |
T |
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| Q |
215 |
gcccttgactatgagcaagagctagagacatccaagaccagctctgcagtggagaagagctatgagttgcctgatgg |
291 |
Q |
| |
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|||||||| | |||||||||||| || || || || || || ||||| || ||||||||||||||| | |||||||| |
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| T |
41388358 |
gcccttgattttgagcaagagcttgaaacttcaaaaacaagttctgctgttgagaagagctatgagcttcctgatgg |
41388434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 68196 - 68470
Alignment:
| Q |
17 |
gattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctggtcgtgacctgactg |
116 |
Q |
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|||||||| |||||||||||||||||||| |||||||| || || |||||||| |||||||| ||||| ||| | ||| | || |||||||| || || | |
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| T |
68196 |
gattctggagatggtgtcagccacacagttcctatctatgaaggatatgcccttccacacgcaatcctgcgtttggatcttgcaggtcgtgatctcacag |
68295 |
T |
|
| Q |
117 |
attacatgatgaaaattctgacagaacgtggttattcttttaccacctcagcagagcgtgaaattgtgagggatatgaaggaaaagctggcttacattgc |
216 |
Q |
| |
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| | | |||||||| | || || ||||| || ||||| ||||| |||| ||||||||||| ||||| || |||||||||| || | |||||||| |
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| T |
68296 |
acgccctcatgaaaatcttaaccgagcgtggatactctttcaccacaacagccgagcgtgaaatcgtgagagacgtgaaggaaaaactatcctacattgc |
68395 |
T |
|
| Q |
217 |
ccttgactatgagcaagagctagagacatccaagaccagctctgcagtggagaagagctatgagttgcctgatgg |
291 |
Q |
| |
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||||| ||||| |||||| |||| || || ||||| ||||| || || ||||||||||||||||| |||||||| |
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| T |
68396 |
tcttgattatgaacaagagttagaaacctcgaagacgagctcagctgttgagaagagctatgagttacctgatgg |
68470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 43647485 - 43647377
Alignment:
| Q |
11 |
gtgttggattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctggtcgtgacc |
110 |
Q |
| |
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||||||||||||||||| ||||| || ||||| || || ||||| ||||||||||| |||||||| |||||||||||| | ||| | ||||||||||| | |
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| T |
43647485 |
gtgttggattctggtgacggtgtgagtcacactgtgccaatctatgagggttatgcactcccacatgccatccttcgtttggatcttgctggtcgtgatc |
43647386 |
T |
|
| Q |
111 |
tgactgatt |
119 |
Q |
| |
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| ||||||| |
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| T |
43647385 |
taactgatt |
43647377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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