View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_47 (Length: 293)
Name: NF7710_low_47
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 125 - 275
Target Start/End: Original strand, 8439407 - 8439557
Alignment:
| Q |
125 |
acaattatgaaattgaattatattttcaacgaaatggaaaagagttaaatcaaaccacaatttaaaagcatctgtggtgaataaatgaaaatgcatattt |
224 |
Q |
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| T |
8439407 |
acaattatgaaattgaattatatcttcaacgaaatggaaaagagttaaatcaaaccacaatttaaaagcatctgtggtgaataaatgaaaatgcatattt |
8439506 |
T |
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| Q |
225 |
actcggggacatattttaaaacaacaaatttaccaaagagggatgctattt |
275 |
Q |
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| T |
8439507 |
actcggggacatattttaaaacaacaaatttaccaaagagggatgctattt |
8439557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 8439171 - 8439292
Alignment:
| Q |
1 |
tttggttgcttcatgagctcatgacattgacatggtgtttgattgcaaaccgatgaagtatgatatacgatgcaggatggaataagagttaaagaagaat |
100 |
Q |
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| T |
8439171 |
tttggttgcttcatgagctcatgac------atggtgtttgattgcaaaccgatgaagtatgatatacgatgcaggatggaataagagttaaagaagaat |
8439264 |
T |
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| Q |
101 |
aagaatactactaaaggatttcaaacaa |
128 |
Q |
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| T |
8439265 |
aagaatactactaaaggatttcaaacaa |
8439292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 52590749 - 52590692
Alignment:
| Q |
156 |
aaatggaaaagagttaaatcaaaccacaatttaaaagcatctgtggtgaataaatgaa |
213 |
Q |
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| T |
52590749 |
aaatggaaaagagttaaaccaaagcacggtttaaaaacatcaatggtgaataaatgaa |
52590692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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