View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_48 (Length: 291)
Name: NF7710_low_48
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 4176608 - 4176346
Alignment:
| Q |
17 |
acacacaacacacgatcactctacaactcaacgttatactcctatcaaacacaaacagaattgaacatcatggctacaacaacttcgtcttttatgtttc |
116 |
Q |
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| T |
4176608 |
acacgcaacacacgatcactctacaactcaacgttatactcctatcaaacacaaacagaattgaacatcatggctacaacaacttcgtcttttatgtttc |
4176509 |
T |
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| Q |
117 |
ttaaacgaattcttacatcatcgccttgtcgtgccagaattggatccctcagatattccaaattaacaatcaaggctcaatcttctgatgtcagaaagga |
216 |
Q |
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| T |
4176508 |
ttaaacgaattcttacatcatcgccttgtcgtgccagaattggatccctcagatattccaaattaacaatcaaggctcaatcttctgatgtcagaaagga |
4176409 |
T |
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| Q |
217 |
acatgttgtaatcgtgggtggtgggatagcaggccttgcaactgcactatccctccacaggtt |
279 |
Q |
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| T |
4176408 |
acatgttgtaatcgtgggtggtgggatagcaggccttgcaactgcactatcccttcacaggtt |
4176346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 279
Target Start/End: Complemental strand, 4172341 - 4172209
Alignment:
| Q |
141 |
cttgtcgtgccagaattggatccctcagatattccaaattaacaatcaaggctcaatcttctgatgtcagaaaggaacatgttgtaatcgtgggtggtgg |
240 |
Q |
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| T |
4172341 |
cttgtcataccagaattggatctctcagaagttccaaattaa---tcaaggttcaatcttcag---tccaaaaggaacatgttgtcattgtgggtggtgg |
4172248 |
T |
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| Q |
241 |
gatagcaggccttgcaactgcactatccctccacaggtt |
279 |
Q |
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| T |
4172247 |
cattgcaggccttgcaactgctctatcccttcacaggtt |
4172209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 4172413 - 4172358
Alignment:
| Q |
60 |
atcaaacacaaacagaattgaacat---catggctacaacaacttcgtcttttatg |
112 |
Q |
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| T |
4172413 |
atcaaacacaatctgaattgaacatgtccatggctacaacaacctcgtcttttatg |
4172358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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