View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_5 (Length: 657)
Name: NF7710_low_5
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 12 - 630
Target Start/End: Original strand, 14001017 - 14001612
Alignment:
| Q |
12 |
aagaatattgatcaggttaataggatgtttaaggaggaggttgttaaactgcagagtggggagtatgagaagatgttttgttcatacttttttgtaataa |
111 |
Q |
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| T |
14001017 |
aagaatattgatcaggttgataggatgtttaaggaggaggttgttaaactgcagagtggggagtatgagaagatgttttgt--------------aataa |
14001102 |
T |
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| Q |
112 |
gaatgatgctatatcattgctgtttgattccttaaaaatttcatcttgcatgttttcatcattgctagtgattgatttttgttacatttaaactatattg |
211 |
Q |
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| T |
14001103 |
gaatgatgctatatcattgctgtttgattccttaaaaatttcatcttgcatgttttcatcattgctagtgattgatttttgttacatttaaactatattg |
14001202 |
T |
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| Q |
212 |
tcaagtcgtgatatgtcatatgtcatgcatttctttcagaactacgtgggctgattttggtggggaaacaaggtatgtctctctctgctttctctcattt |
311 |
Q |
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| T |
14001203 |
tcaagtcgtgatatgtcatatgttatgcatttctttcagaactatgtgggctgattttggtggggaaacaaggtatgtctc--tctgctttctctcattt |
14001300 |
T |
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| Q |
312 |
ggtgctttataaaaccaaatgttttacccattgaatattaaagacatccttgaaaatattgcaagaattgcaggccatagagaacagttcacgcctcgac |
411 |
Q |
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| T |
14001301 |
ggtgctttataaaaccaaatgttttacccattgaatattaaagacatccttgaaaatattgcaagaattgcaggccatagagaacagttcacgcctcgac |
14001400 |
T |
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| Q |
412 |
agaggaattctcaatatttccctagcaaactactcttcacaaagttttgagggagaccactttgcctcttcatttgaattcattaacatcacacaatgat |
511 |
Q |
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| T |
14001401 |
agaggaattctcaatatttccctagcaaactactcttcacaaagttttgatggagaccactttgcctcttcatttgaattcattaacatcacacaatgat |
14001500 |
T |
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| Q |
512 |
caggaaaacaacgtcgataaacaaggtctaaaatttccaagttctgtaacaaggaagttacaacttacaagtcatcgctgagagattaaatgctactaac |
611 |
Q |
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| T |
14001501 |
caggaaaacaacgtcgataaacaaggtctgaaatttccaagttctgtaacaaggaag-------ttacaagtcatcgctgagagattaaatgctactaac |
14001593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 332 - 434
Target Start/End: Original strand, 18288403 - 18288504
Alignment:
| Q |
332 |
gttttacccattgaatattaaagacatccttgaaaatattgcaagaattgcaggccatagagaacagttcacgcctcgacagaggaattctcaatatttc |
431 |
Q |
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| T |
18288403 |
gttttacctattgaatgt-aaacaaatccttgagaatattgcaagaattgcaggccatagagaacagtgcttgcctcgacagaggaattctcagtattgc |
18288501 |
T |
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| Q |
432 |
cct |
434 |
Q |
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||| |
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| T |
18288502 |
cct |
18288504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 1472135 - 1472209
Alignment:
| Q |
10 |
cgaagaatattgatcaggttaataggatgtttaaggaggaggttgttaaactgcagagtggggagtatgagaaga |
84 |
Q |
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| T |
1472135 |
cgaagaatattgatcaggttgttatgatgcttaagaaggaggttgttaagacgcagagcggggagcatgagaaga |
1472209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 186
Target Start/End: Original strand, 1473234 - 1473263
Alignment:
| Q |
157 |
ttgcatgttttcatcattgctagtgattga |
186 |
Q |
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| T |
1473234 |
ttgcatgttttcatcattgctagtgattga |
1473263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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