View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_53 (Length: 272)
Name: NF7710_low_53
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 39016400 - 39016149
Alignment:
| Q |
1 |
tcacacaagagattgtagggatgaggaagacattggtgttctataggaatagagctccaaatggtatcaaaacagggtggattatgcatgaatttcgctt |
100 |
Q |
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| T |
39016400 |
tcacacaagaggttgtagggatgaggaagacattggtgttctataggaatagagctccaaatggtatcaaaacagggtggattatgcatgaatttcgctt |
39016301 |
T |
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| Q |
101 |
agaaacaccacacatgcctcctaaggtgagttttctatgtattgcctaatcaattttccaatgtggtgtaactacgttttttaaattaa-aaaacgtttt |
199 |
Q |
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| T |
39016300 |
agagacaccacacatgcctcctaaggtgagttttctatgtattgcctaatcaattttccaatgtggtgtaactacgttttttaaattaaaaaaacgtttt |
39016201 |
T |
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| Q |
200 |
agtgtcatttcaaaacattcaacaccatttagtgtttttgatagaaaagtat |
251 |
Q |
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| T |
39016200 |
agtgtcatttcaaaacattcaacaccatttagagtttttgatagaaaagtat |
39016149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 30482800 - 30482926
Alignment:
| Q |
1 |
tcacacaagagattgtagggatgaggaagacattggtgttctataggaatagagctccaaatggtatcaaaacagggtggattatgcatgaatttcgctt |
100 |
Q |
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||||||| ||| ||||||| |||||||| || | ||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||| | || |
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| T |
30482800 |
tcacacatgaggttgtaggaatgaggaaaactctagtgttctataggaatagagctccaaatggaatcaaaacaggttggatcatgcatgagtttaggtt |
30482899 |
T |
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| Q |
101 |
agaaacaccacacatgcctcctaaggt |
127 |
Q |
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| T |
30482900 |
ggaaaccccacatatgccacctaaggt |
30482926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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