View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_55 (Length: 266)
Name: NF7710_low_55
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 110383 - 110619
Alignment:
| Q |
19 |
gcaactctattctactggtttttcttagttatacagttatttaagtagaatatttttcttgtttataacatgtggcgtgattgttattctgtgcaagtat |
118 |
Q |
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| T |
110383 |
gcaactctattctactggtttttcttagttatacagttatttaagtagaatatttttcttgtttataacatgtggcgtgattgttattctgtgcaagtat |
110482 |
T |
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| Q |
119 |
aatacacatttataatggcatattatgtggtttttattttctctcttttcaagtgaatccgctattttaattatagatatgttggtaggtaagaattctg |
218 |
Q |
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| T |
110483 |
aatacacatttataatggcatattatgtggtttttattttctctcttttcaagtgaaaccgctattttaattatagatatgttggtaggtaacaattctg |
110582 |
T |
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| Q |
219 |
atgtaatcacacttttacataacaggatcgtgtgtgc |
255 |
Q |
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| T |
110583 |
atgtcatcacactttcacataacaggattgtgtgtgc |
110619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 20647484 - 20647254
Alignment:
| Q |
21 |
aactctattctactggtttttcttagttatacagttatttaagtagaatatttttcttgtt------tataacatgtggcgtgattgttattctgtgcaa |
114 |
Q |
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| T |
20647484 |
aactctattctactggtttttcttagttat--------ttaagtagaatatttttcttgttgatatttataacatgtggcgtgattgttattctgtgcaa |
20647393 |
T |
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| Q |
115 |
gtataatacacatttataatggcatattatgtggtttttattttctctcttttcaagtgaatccgctattttaattatagatatgttggtaggtaagaat |
214 |
Q |
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| T |
20647392 |
gtataatacacatttataatggcatattatgtggtttttattttctctcttttcaagtgaaaccgctattttaattatagatatgttggtaggtaagaat |
20647293 |
T |
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| Q |
215 |
tctgatgtaatcacacttttacataacaggatcgtgtgt |
253 |
Q |
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| T |
20647292 |
tctgatgtcattacacttttacataacatgattgtgtgt |
20647254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 63559 - 63661
Alignment:
| Q |
105 |
ttctgtgcaagtataatacacatttataatggcatattat-gtgg-tttttattttctctcttttcaagtgaatccgctattttaattatagatatgttg |
202 |
Q |
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|||||||||||||||||| | |||||||| ||||||||| || | |||||||||| | ||||||||||||| || |||||||| ||||| |||||||| |
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| T |
63559 |
ttctgtgcaagtataataagcctttataatagcatattatagtagatttttattttgttgcttttcaagtgaaaccactattttacttatatatatgttg |
63658 |
T |
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| Q |
203 |
gta |
205 |
Q |
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||| |
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| T |
63659 |
gta |
63661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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