View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7710_low_57 (Length: 258)

Name: NF7710_low_57
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7710_low_57
NF7710_low_57
[»] chr3 (20 HSPs)
chr3 (16-245)||(47860612-47860842)
chr3 (16-101)||(25295103-25295188)
chr3 (16-103)||(17003625-17003711)
chr3 (170-245)||(4222152-4222228)
chr3 (16-91)||(46918524-46918598)
chr3 (171-239)||(14339622-14339691)
chr3 (16-104)||(32211837-32211925)
chr3 (16-104)||(45261376-45261463)
chr3 (28-78)||(8825432-8825482)
chr3 (170-226)||(7975429-7975485)
chr3 (170-236)||(30311317-30311384)
chr3 (170-223)||(27093373-27093426)
chr3 (171-219)||(28928895-28928943)
chr3 (170-218)||(32651455-32651503)
chr3 (170-218)||(46518639-46518687)
chr3 (118-169)||(28695674-28695725)
chr3 (170-216)||(31788989-31789035)
chr3 (170-218)||(8075144-8075192)
chr3 (170-226)||(31520614-31520670)
chr3 (182-238)||(42430357-42430412)
[»] chr1 (27 HSPs)
chr1 (16-215)||(52336794-52336991)
chr1 (16-100)||(36437252-36437335)
chr1 (16-101)||(9851864-9851948)
chr1 (170-223)||(9165207-9165260)
chr1 (170-223)||(31794276-31794329)
chr1 (170-218)||(8177199-8177247)
chr1 (170-236)||(15786318-15786385)
chr1 (170-236)||(33700771-33700838)
chr1 (170-243)||(36371481-36371555)
chr1 (170-239)||(52116776-52116846)
chr1 (16-77)||(31181127-31181188)
chr1 (170-245)||(6650606-6650682)
chr1 (16-72)||(28165205-28165261)
chr1 (170-236)||(8904425-8904492)
chr1 (170-221)||(51703790-51703841)
chr1 (171-236)||(2799874-2799940)
chr1 (20-98)||(17971416-17971494)
chr1 (170-216)||(21268012-21268058)
chr1 (20-98)||(46443718-46443795)
chr1 (170-223)||(6122805-6122858)
chr1 (193-245)||(12259294-12259347)
chr1 (112-169)||(17988123-17988180)
chr1 (170-238)||(19528323-19528392)
chr1 (170-226)||(32916812-32916866)
chr1 (27-104)||(39150228-39150305)
chr1 (177-218)||(44046165-44046206)
chr1 (170-245)||(4566559-4566635)
[»] chr6 (10 HSPs)
chr6 (20-223)||(28363800-28364001)
chr6 (170-239)||(21418481-21418551)
chr6 (168-216)||(6758441-6758489)
chr6 (170-218)||(12188320-12188368)
chr6 (170-221)||(34293830-34293881)
chr6 (173-235)||(646128-646190)
chr6 (28-97)||(180364-180433)
chr6 (112-161)||(1856872-1856921)
chr6 (112-161)||(12143696-12143745)
chr6 (194-222)||(8268673-8268701)
[»] chr5 (19 HSPs)
chr5 (29-245)||(43442067-43442283)
chr5 (16-91)||(27193023-27193098)
chr5 (15-104)||(11691107-11691194)
chr5 (27-104)||(11983629-11983706)
chr5 (16-96)||(19296214-19296293)
chr5 (170-245)||(25627068-25627144)
chr5 (170-223)||(17028276-17028329)
chr5 (170-223)||(21549149-21549202)
chr5 (170-236)||(34984817-34984884)
chr5 (170-217)||(35796637-35796684)
chr5 (182-236)||(1410658-1410712)
chr5 (16-167)||(11824471-11824622)
chr5 (174-216)||(29075796-29075838)
chr5 (186-238)||(84851-84904)
chr5 (170-223)||(87435-87488)
chr5 (170-223)||(16436629-16436681)
chr5 (182-223)||(29692398-29692439)
chr5 (170-223)||(30883210-30883263)
chr5 (117-166)||(35547024-35547073)
[»] chr8 (16 HSPs)
chr8 (16-236)||(43594316-43594540)
chr8 (16-104)||(36054828-36054916)
chr8 (16-91)||(30112486-30112561)
chr8 (16-98)||(8251248-8251330)
chr8 (170-239)||(19703482-19703552)
chr8 (168-245)||(35690053-35690131)
chr8 (170-223)||(2203503-2203556)
chr8 (170-223)||(30483896-30483949)
chr8 (170-223)||(44780126-44780179)
chr8 (170-237)||(16852351-16852419)
chr8 (170-236)||(3624591-3624658)
chr8 (16-104)||(1445365-1445453)
chr8 (112-169)||(2520102-2520159)
chr8 (170-215)||(6569791-6569836)
chr8 (170-223)||(11819787-11819840)
chr8 (168-213)||(40591741-40591786)
[»] chr7 (23 HSPs)
chr7 (16-179)||(46572255-46572422)
chr7 (16-152)||(9183236-9183373)
chr7 (28-104)||(41508124-41508200)
chr7 (16-90)||(6549131-6549205)
chr7 (170-239)||(43590918-43590988)
chr7 (170-223)||(25021347-25021400)
chr7 (170-236)||(26459408-26459475)
chr7 (170-223)||(18363707-18363760)
chr7 (170-223)||(41519276-41519329)
chr7 (172-243)||(17113808-17113880)
chr7 (16-104)||(46101260-46101348)
chr7 (112-159)||(20949194-20949241)
chr7 (176-223)||(23735239-23735286)
chr7 (41-104)||(34470095-34470158)
chr7 (187-236)||(9871284-9871334)
chr7 (170-238)||(19553465-19553533)
chr7 (16-97)||(20949085-20949165)
chr7 (182-223)||(21854571-21854612)
chr7 (182-245)||(20335820-20335884)
chr7 (170-245)||(25956282-25956357)
chr7 (170-218)||(42836018-42836066)
chr7 (16-56)||(46341509-46341549)
chr7 (176-220)||(48984144-48984188)
[»] scaffold0088 (2 HSPs)
scaffold0088 (16-104)||(51285-51373)
scaffold0088 (112-169)||(51395-51452)
[»] scaffold0836 (1 HSPs)
scaffold0836 (16-104)||(3034-3122)
[»] chr4 (21 HSPs)
chr4 (16-104)||(18838764-18838851)
chr4 (16-97)||(16572264-16572345)
chr4 (21-104)||(31707397-31707480)
chr4 (170-236)||(49576892-49576959)
chr4 (170-236)||(37109349-37109416)
chr4 (21-68)||(42312492-42312539)
chr4 (171-236)||(19680786-19680852)
chr4 (176-236)||(13015444-13015505)
chr4 (174-223)||(38869783-38869832)
chr4 (171-223)||(4249189-4249241)
chr4 (176-235)||(31759657-31759717)
chr4 (170-236)||(37274457-37274525)
chr4 (27-87)||(38216017-38216077)
chr4 (170-236)||(7292796-7292863)
chr4 (112-169)||(18838873-18838931)
chr4 (170-216)||(19238596-19238642)
chr4 (170-215)||(29312272-29312317)
chr4 (112-169)||(31707321-31707378)
chr4 (170-223)||(31826620-31826673)
chr4 (175-223)||(8030216-8030264)
chr4 (170-218)||(51250539-51250587)
[»] scaffold1809 (1 HSPs)
scaffold1809 (20-99)||(550-629)
[»] chr2 (18 HSPs)
chr2 (16-157)||(28650192-28650330)
chr2 (170-226)||(16918587-16918643)
chr2 (21-97)||(38214130-38214206)
chr2 (170-245)||(1435075-1435150)
chr2 (19-98)||(19285895-19285974)
chr2 (170-236)||(42327393-42327460)
chr2 (170-239)||(23052518-23052588)
chr2 (170-238)||(29503282-29503351)
chr2 (170-226)||(1729827-1729883)
chr2 (170-226)||(42602565-42602621)
chr2 (21-104)||(39063642-39063725)
chr2 (170-220)||(42922425-42922475)
chr2 (170-223)||(11251098-11251151)
chr2 (112-169)||(21794959-21795016)
chr2 (182-223)||(23465933-23465974)
chr2 (170-223)||(34041600-34041653)
chr2 (170-238)||(37480086-37480155)
chr2 (28-104)||(38496497-38496573)
[»] scaffold0122 (1 HSPs)
scaffold0122 (170-223)||(6931-6984)
[»] scaffold0291 (1 HSPs)
scaffold0291 (182-238)||(2466-2523)
[»] scaffold1367 (1 HSPs)
scaffold1367 (172-236)||(838-903)
[»] scaffold0299 (1 HSPs)
scaffold0299 (172-236)||(11541-11606)
[»] scaffold0238 (1 HSPs)
scaffold0238 (184-236)||(5218-5271)
[»] scaffold0172 (1 HSPs)
scaffold0172 (170-223)||(15789-15842)
[»] scaffold0002 (1 HSPs)
scaffold0002 (170-223)||(94983-95036)
[»] scaffold0194 (1 HSPs)
scaffold0194 (182-245)||(13035-13099)
[»] scaffold0180 (1 HSPs)
scaffold0180 (169-236)||(19960-20028)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 47860612 - 47860842
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgtannnnnnn-atg 114  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||        |||    
T  47860612 aaatgtcacatcttttaaggtatagttattacttaaaagacatttttatccttcatttaattattctctttttaatcttagtgggtgtattttttttatg 47860711  T
Q  115 agggtatattagtaaaaatatctaaaaagttatattaattaatgattatattggtgttggcctagttgtattggctttggatttgggagtgtgctcctcc 214  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| | |||||||||||||||    
T  47860712 agggtatattagtaaaaatatctaaaaagttacattaattaatgatcatattggtgttggtctagttgtattggctttggatctaggagtgtgctcctcc 47860811  T
Q  215 tcaaagtcttagttcgattctccctgatgtc 245  Q
    ||||||||| |||||||||||| ||| ||||    
T  47860812 tcaaagtctcagttcgattctctctgctgtc 47860842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 25295188 - 25295103
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggt 101  Q
    |||||| ||| |||||||||| || |||||| ||||||||| ||||||||| |||||||||| ||||||||||||| |||||||||    
T  25295188 aaatgttacaacttttaaggtgtaattattgtttaaaagacttttttatccctcatttaatgcttctctttttaatattagtgggt 25295103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 17003711 - 17003625
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgt 103  Q
    |||||||||| |||||||||| ||||||||||||||| ||| ||||||||| | |||||||| ||||||||| ||| |||||||||||    
T  17003711 aaatgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccct-atttaatgtttctcttttaaatattagtgggtgt 17003625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 4222152 - 4222228
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctccctgatgtc 245  Q
    |||||| |||| |||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| ||| ||||    
T  4222152 gttggcttagtggtattggcttgggatctgggagtgtgctcctcctcaaagtcttaggttcgattctctctggtgtc 4222228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 46918598 - 46918524
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaat 91  Q
    ||||||||||  |||||||| |||||||||||||||||||| ||||||||||||||||||||  | ||||||||||    
T  46918598 aaatgtcacaatttttaagg-atagttattgcttaaaagacttttttatccttcatttaatgtctgtctttttaat 46918524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 14339622 - 14339691
Alignment:
Q  171 ttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctccct 239  Q
    ||||||| || |||||||||| |||||||||||||||||||||||||| |||| | ||||||||||||||    
T  14339622 ttggcctggtggtattggcttgggatttgggagtgtgctcctcctcaatgtctcaggttcgattctccct 14339691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 32211925 - 32211837
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 104  Q
    |||| ||||| |||||||||| ||||||||| ||||||||| ||| || || | |||||||| || |||||||||| ||||||||||||    
T  32211925 aaatttcacaacttttaaggtgtagttattgtttaaaagacttttctacccgttatttaatgtttgtctttttaatattagtgggtgta 32211837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 45261376 - 45261463
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 104  Q
    |||||||||| |||||||| | ||||||||||||||| ||| ||| ||||| | |||||||| ||||||||| ||| ||||||||||||    
T  45261376 aaatgtcacaacttttaagctgtagttattgcttaaatgacttttctatccct-atttaatgtttctcttttaaatattagtgggtgta 45261463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 8825482 - 8825432
Alignment:
Q  28 ttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatga 78  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  8825482 ttttaaggtgtagttattgcttaaaagacttttctatccttcatttaatga 8825432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 7975429 - 7975485
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtcttag 226  Q
    ||||||||||| |||| ||||| |||| ||||||||||||||||||||| |||||||    
T  7975429 gttggcctagtggtataggcttgggatctgggagtgtgctcctcctcaaggtcttag 7975485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 30311317 - 30311384
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctc 236  Q
    ||||||||||| |||| ||||| |||| ||||||||||||||||||||| |||| | |||||||||||    
T  30311317 gttggcctagtggtataggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcgattctc 30311384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 27093426 - 27093373
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||||||||| |||||||||| | | |||||||||||||||||||||| ||||    
T  27093426 gttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtct 27093373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 28928943 - 28928895
Alignment:
Q  171 ttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaa 219  Q
    |||||||||| |||||||||| |||| || |||||||||||||||||||    
T  28928943 ttggcctagtggtattggcttgggatctgagagtgtgctcctcctcaaa 28928895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 32651503 - 32651455
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaa 218  Q
    ||||||||||| |||||||||| |||  |||||||||||||||||||||    
T  32651503 gttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaa 32651455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 46518639 - 46518687
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaa 218  Q
    |||||| |||| |||||||||| |||| |||||||||||||||||||||    
T  46518639 gttggcatagtggtattggcttgggatctgggagtgtgctcctcctcaa 46518687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 28695674 - 28695725
Alignment:
Q  118 gtatattagtaaaaatatctaaaaagttatattaattaatgattatattggt 169  Q
    ||||||| ||||||||||  ||||||||| | ||||||||||||||||||||    
T  28695674 gtatatttgtaaaaatattcaaaaagttacactaattaatgattatattggt 28695725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 31789035 - 31788989
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctc 216  Q
    |||||||||||  ||||||||| |||| |||||||||||||||||||    
T  31789035 gttggcctagtgttattggcttgggatctgggagtgtgctcctcctc 31788989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 8075192 - 8075144
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaa 218  Q
    |||| |||||| |||| ||||| ||| ||||||||||||||||||||||    
T  8075192 gttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaa 8075144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 31520670 - 31520614
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtcttag 226  Q
    |||||||| || | |||||||| |||| ||||||||||||||||||| | |||||||    
T  31520670 gttggcctggtggcattggcttgggatctgggagtgtgctcctcctcgaggtcttag 31520614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 42430357 - 42430412
Alignment:
Q  182 gtattggctttggatttgggagtgtgctcctcctcaaagtcttagttcgattctccc 238  Q
    |||||| ||| |||| | |||||||||||||| |||| |||||||||||||||||||    
T  42430357 gtattgacttgggatcttggagtgtgctcctc-tcaaggtcttagttcgattctccc 42430412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 52336991 - 52336794
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgtannnnnnnatga 115  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||       ||||    
T  52336991 aaatgtcacatcttttaaggtatagttattgcttaaaa-acatttttatccttcatttaatgattctcttttttatcttagtgggtgtatttttt-atga 52336894  T
Q  116 gggtatattagtaaaaatatctaaaaagttatattaattaatgattatattggtgttggcctagttgtattggctttggatttgggagtgtgctcctcct 215  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||    
T  52336893 gggtatattagtaaaaatatctaaaaagttacattaattaatgattatattggtgttggcctagtggtattggcttgggatctgggagtgtgctcctcct 52336794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 36437335 - 36437252
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtggg 100  Q
    |||||||||| ||||||||| |||||||||||||||||||| ||||||||| ||||||||||  | |||||||||| ||||||||    
T  36437335 aaatgtcacaacttttaagg-atagttattgcttaaaagacttttttatccctcatttaatgtctgtctttttaatattagtggg 36437252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 9851948 - 9851864
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggt 101  Q
    |||||||||| ||||||| || ||||||||||||||| ||| ||||||||| | |||||||| ||||||||| ||| |||||||||    
T  9851948 aaatgtcacaacttttaaagtgtagttattgcttaaatgacctttttatccct-atttaatgtttctcttttaaatattagtgggt 9851864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 9165260 - 9165207
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||||||||||    
T  9165260 gttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaagtct 9165207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 31794329 - 31794276
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||||||||| |||||||||| ||| |||||||||||||||||||||| ||||    
T  31794329 gttggcctagtggtattggcttgggacttgggagtgtgctcctcctcaaggtct 31794276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 8177247 - 8177199
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaa 218  Q
    ||||||||||| |||||||||| |||| |||||||||||||||||||||    
T  8177247 gttggcctagtggtattggcttgggatctgggagtgtgctcctcctcaa 8177199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 15786385 - 15786318
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctc 236  Q
    ||||| ||||| |||||||||| |||| ||||||||||||||||||||| |||| | |||||||||||    
T  15786385 gttggtctagtagtattggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcgattctc 15786318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 33700838 - 33700771
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctc 236  Q
    ||||||||||| |||||||||| | || ||||||||||||||||||||| |||| | |||||||||||    
T  33700838 gttggcctagtggtattggcttggaatctgggagtgtgctcctcctcaaggtctcaggttcgattctc 33700771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 36371481 - 36371555
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctccctgatg 243  Q
    ||||||||||| |||||||||| | |  ||||||||||||||||||||| |||| | ||||||||||| ||||||    
T  36371481 gttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtctgaggttcgattctctctgatg 36371555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 52116846 - 52116776
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctccct 239  Q
    |||||||| || |||||||||| ||| |||||||||||||||||||||| |||| | |||| |||||||||    
T  52116846 gttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctcaggttcaattctccct 52116776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 31181188 - 31181127
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatg 77  Q
    |||||||||| |||||||  ||||||||||| ||||||||| ||||||  ||||||||||||    
T  31181188 aaatgtcacaacttttaacttatagttattgtttaaaagacttttttacacttcatttaatg 31181127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 6650606 - 6650682
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctccctgatgtc 245  Q
    ||||||||||| |||||||||| ||||  |||||| ||||||||||||| |||| | ||||||||||| ||| ||||    
T  6650606 gttggcctagtggtattggcttgggatcggggagtatgctcctcctcaatgtctcaggttcgattctctctggtgtc 6650682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 28165261 - 28165205
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatt 72  Q
    |||||||||| |||| ||||||||||||||||||||||||  |||||| || |||||    
T  28165261 aaatgtcacaactttaaaggtatagttattgcttaaaagatttttttacccctcatt 28165205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 8904425 - 8904492
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct-tagttcgattctc 236  Q
    ||||||||||| |||||| ||| |||| || |||||||||||||||||| ||||  ||||||||||||    
T  8904425 gttggcctagtagtattgacttgggatatgtgagtgtgctcctcctcaaggtctcaagttcgattctc 8904492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 51703790 - 51703841
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagt 221  Q
    ||||| ||||| |||||||||| | || ||||||||||||||||||||||||    
T  51703790 gttggtctagtggtattggcttggaatctgggagtgtgctcctcctcaaagt 51703841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 2799874 - 2799940
Alignment:
Q  171 ttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctc 236  Q
    |||||||||| |||| |||||  ||| ||||||||||||||||||||| |||| | |||||||||||    
T  2799874 ttggcctagtggtataggcttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattctc 2799940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 17971494 - 17971416
Alignment:
Q  20 gtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtg 98  Q
    |||||| ||||||||||||| |||||| ||||||||| ||| || || |||||||||| |  |||||| ||| ||||||    
T  17971494 gtcacaacttttaaggtatatttattgtttaaaagacttttctaaccctcatttaatgttggtcttttcaatattagtg 17971416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 21268058 - 21268012
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctc 216  Q
    ||||| ||||| |||||||||| ||| ||||||||||||||||||||    
T  21268058 gttgggctagtagtattggcttgggacttgggagtgtgctcctcctc 21268012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 46443718 - 46443795
Alignment:
Q  20 gtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtg 98  Q
    |||||| |||||||||| || ||||| ||||||| || ||||||||| |||||||  | ||||||||||||| ||||||    
T  46443718 gtcacaacttttaaggtgtaattattacttaaaaaacttttttatccctcatttatag-ttctctttttaatgttagtg 46443795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 6122805 - 6122858
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    |||| |||||| |||| ||||| ||| |||||||||||||||||||||| ||||    
T  6122805 gttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtct 6122858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 12259294 - 12259347
Alignment:
Q  193 ggatttgggagtgtgctcctcctcaaagtct-tagttcgattctccctgatgtc 245  Q
    |||||||||||||||||||||||| ||||||  |||||||||||| | ||||||    
T  12259294 ggatttgggagtgtgctcctcctcgaagtctcaagttcgattctcaccgatgtc 12259347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 17988180 - 17988123
Alignment:
Q  112 atgagggtatattagtaaaaatatctaaaaagttatattaattaatgattatattggt 169  Q
    |||||| |||||| |||||| ||| | |||||||||||| |||||||||||| |||||    
T  17988180 atgaggatatatttgtaaaattattttaaaagttatatttattaatgattatcttggt 17988123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 19528392 - 19528323
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctccc 238  Q
    |||||||| || |||||||||| |||| |  |||||||||||||||||| |||| | |||||||||||||    
T  19528392 gttggcctggtggtattggcttgggatctatgagtgtgctcctcctcaaggtctcaggttcgattctccc 19528323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 32916866 - 32916812
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtcttag 226  Q
    ||||| ||||| |||||| |||||||||  ||||||||||||||||||| |||||||    
T  32916866 gttggtctagtagtattgactttggatt--ggagtgtgctcctcctcaaggtcttag 32916812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 39150305 - 39150228
Alignment:
Q  27 cttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 104  Q
    |||||||||| ||||||||||||||||||| ||| || || | |||||||| || | |||||||| ||| || |||||    
T  39150305 cttttaaggtgtagttattgcttaaaagacttttctaccccttatttaatgtttttgtttttaatattaatgagtgta 39150228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 44046206 - 44046165
Alignment:
Q  177 tagttgtattggctttggatttgggagtgtgctcctcctcaa 218  Q
    |||| |||||||||| |||| |||||||||||||||||||||    
T  44046206 tagtggtattggcttgggatctgggagtgtgctcctcctcaa 44046165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 4566559 - 4566635
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctccctgatgtc 245  Q
    |||||||||||  ||||||||| | |  ||||||||||||||||||||  |||| | ||||||||||| ||||||||    
T  4566559 gttggcctagtgatattggcttggaacctgggagtgtgctcctcctcagggtctcaggttcgattctctctgatgtc 4566635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 28363800 - 28364001
Alignment:
Q  20 gtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgtannnnnnnatgagggt 119  Q
    ||||||||||||||||||||||||||| ||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||       ||||| ||    
T  28363800 gtcacatcttttaaggtatagttattgattaaaagaa-tttttatctttcatttaatgattctctttttaatcttagtgggtgtatttttttatgagagt 28363898  T
Q  120 atattagtaaaaatatctaaaaagttatattaattaatgattatattggtgttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaa 219  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| || |||| || ||||||||||||||||||     
T  28363899 atattagtaaaaatatctaaaaagttatattaattaat-attatattggtgttggcatagtggtattggtttgggatctgcgagtgtgctcctcctcaag 28363997  T
Q  220 gtct 223  Q
    ||||    
T  28363998 gtct 28364001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 21418481 - 21418551
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct-tagttcgattctccct 239  Q
    |||||||| || |||||||||| ||| |||||||||||||||||||| | ||||  |||||||||||||||    
T  21418481 gttggcctggtggtattggcttgggacttgggagtgtgctcctcctccatgtctcaagttcgattctccct 21418551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 6758489 - 6758441
Alignment:
Q  168 gtgttggcctagttgtattggctttggatttgggagtgtgctcctcctc 216  Q
    |||||||||| || |||||||||| ||||||||||||||||||| ||||    
T  6758489 gtgttggcctggtggtattggcttaggatttgggagtgtgctccacctc 6758441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 12188368 - 12188320
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaa 218  Q
    ||||||||||| |||||||||| |||  |||||||||||||||||||||    
T  12188368 gttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaa 12188320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 34293881 - 34293830
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagt 221  Q
    |||| |||||| ||||||| || | |||||||||||||||||||||||||||    
T  34293881 gttgacctagtggtattggtttggaatttgggagtgtgctcctcctcaaagt 34293830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 646128 - 646190
Alignment:
Q  173 ggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtcttagttcgattct 235  Q
    ||||||||||||||||| | |||||||||||||||||| |||| ||  | | |||||||||||    
T  646128 ggcctagttgtattggcctgggatttgggagtgtgctcatccttaagatttaagttcgattct 646190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 180364 - 180433
Alignment:
Q  28 ttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagt 97  Q
    ||||||| | ||||||||||||||||||| ||| || || | |||||||| || |||||||||| |||||    
T  180364 ttttaagatgtagttattgcttaaaagacttttataccccttatttaatgtttgtctttttaatattagt 180433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 1856872 - 1856921
Alignment:
Q  112 atgagggtatattagtaaaaatatctaaaaagttatattaattaatgatt 161  Q
    ||||| ||||||| |||||||||| |||||| ||| ||||||||||||||    
T  1856872 atgagagtatatttgtaaaaatatttaaaaaattacattaattaatgatt 1856921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 12143745 - 12143696
Alignment:
Q  112 atgagggtatattagtaaaaatatctaaaaagttatattaattaatgatt 161  Q
    |||||||| |||| ||||||||||  ||||||||| ||||||||||||||    
T  12143745 atgagggtgtatttgtaaaaatattcaaaaagttacattaattaatgatt 12143696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 8268673 - 8268701
Alignment:
Q  194 gatttgggagtgtgctcctcctcaaagtc 222  Q
    |||||||||||||||||||||||||||||    
T  8268673 gatttgggagtgtgctcctcctcaaagtc 8268701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 29 - 245
Target Start/End: Original strand, 43442067 - 43442283
Alignment:
Q  29 tttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgtannnnnnnatgagggtatattagta 128  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||       |||| |||||||| |||    
T  43442067 tttaaggtatagttattgcttaaaagatatttttatccttcatttaatgattttctttttaatcttagtgggtgtatttttt-atgatggtatattggta 43442165  T
Q  129 aaaatatctaaaaagttatattaattaatgattatattggtgttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gt 227  Q
    |||||||||||||||||| |||||  ||||||||||||||||||||| |||| ||||||| ||  ||| ||||||||||||||||||||| |||| | ||    
T  43442166 aaaatatctaaaaagttacattaaacaatgattatattggtgttggcatagtggtattggtttgagatctgggagtgtgctcctcctcaaggtctcaggt 43442265  T
Q  228 tcgattctccctgatgtc 245  Q
    ||||||||| ||| ||||    
T  43442266 tcgattctctctgttgtc 43442283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 27193023 - 27193098
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaat 91  Q
    |||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||||  ||||||||||||    
T  27193023 aaatgtcacaacttttaagatatagttattgtttaaaagacttttttatccttcatttaatgcatctctttttaat 27193098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 11691194 - 11691107
Alignment:
Q  15 caaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 104  Q
    |||||||| ||  |||| |||| |||||||| ||||||||||  || ||||| |||||||||| |||||||||||||||||||| |||||    
T  11691194 caaatgtcgcaattttttaggtgtagttatttcttaaaagac--ttctatccctcatttaatgtttctctttttaatcttagtgagtgta 11691107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 11983706 - 11983629
Alignment:
Q  27 cttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 104  Q
    |||||||||| || |||||| ||||||||  |||||| || |||||||||| ||||||||||||| ||||||| ||||    
T  11983706 cttttaaggtgtaattattgtttaaaagatttttttacccctcatttaatgtttctctttttaatattagtggatgta 11983629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 19296293 - 19296214
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttag 96  Q
    |||||||||| ||||||| || ||||||||||||||||||| ||| ||||| | |||||||| ||||| ||||||| ||||    
T  19296293 aaatgtcacaacttttaaagtgtagttattgcttaaaagacttttctatccat-atttaatgtttctcattttaatattag 19296214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 25627068 - 25627144
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctccctgatgtc 245  Q
    ||||||||||| |||||||||| | | |||||||||||||||||||||| |||| | ||||||||||| ||| ||||    
T  25627068 gttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgtc 25627144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 17028329 - 17028276
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    |||| |||||||||||||| || ||| |||||||||||||||||||||| ||||    
T  17028329 gttgacctagttgtattgggttgggacttgggagtgtgctcctcctcaaggtct 17028276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 21549202 - 21549149
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||||||||| |||||||||| |||  |||||||||||||||||| |||||||    
T  21549202 gttggcctagtggtattggcttgggacctgggagtgtgctcctccttaaagtct 21549149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 34984817 - 34984884
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctc 236  Q
    ||||| ||||| |||||||||| | |  ||||||||||||||||||||| |||||| |||||||||||    
T  34984817 gttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtcttaggttcgattctc 34984884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 35796684 - 35796637
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctca 217  Q
    ||||||||||| ||||||| |||||| || ||||||||||||||||||    
T  35796684 gttggcctagtggtattggttttggacttaggagtgtgctcctcctca 35796637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 1410712 - 1410658
Alignment:
Q  182 gtattggctttggatttgggagtgtgctcctcctcaaagtcttagttcgattctc 236  Q
    |||||| ||| |||| ||||||||||||||||||| | |||| ||||||||||||    
T  1410712 gtattgacttgggatatgggagtgtgctcctcctcgaggtctcagttcgattctc 1410658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 11824471 - 11824622
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgtannnnnnnatga 115  Q
    |||||| ||| ||||||| ||||| |||||| ||||||||| ||| ||  | ||||||| ||||| |  ||||| | ||||||| ||||       || |    
T  11824471 aaatgttacaacttttaaagtataattattgtttaaaagacttttatacacctcatttactgattattattttattattagtggatgtaactttctataa 11824570  T
Q  116 gggtatattagtaaaaatatctaaaaagttatattaattaatgattatattg 167  Q
    || ||||||  ||||||||| |||||||||| || ||||||||||| |||||    
T  11824571 ggatatatttataaaaatatttaaaaagttaaatcaattaatgattgtattg 11824622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 29075796 - 29075838
Alignment:
Q  174 gcctagttgtattggctttggatttgggagtgtgctcctcctc 216  Q
    ||||||| |||||||||| |||| |||||||||||||||||||    
T  29075796 gcctagtggtattggcttgggatctgggagtgtgctcctcctc 29075838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 84851 - 84904
Alignment:
Q  186 tggctttggatttgggagtgtgctcctcctcaaagtct-tagttcgattctccc 238  Q
    |||||| |||| ||||||||||||||||||||| ||||  ||||||||||||||    
T  84851 tggcttgggatctgggagtgtgctcctcctcaaggtctcaagttcgattctccc 84904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 87488 - 87435
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||||||||| |||||| ||| | || ||||||||||||||||||||| ||||    
T  87488 gttggcctagtggtattgccttggaatctgggagtgtgctcctcctcaaggtct 87435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 16436629 - 16436681
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||||||||| |||||||||| ||| |||| ||||||||||||||||| ||||    
T  16436629 gttggcctagtggtattggcttgggacttgg-agtgtgctcctcctcaaggtct 16436681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 29692439 - 29692398
Alignment:
Q  182 gtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||||| || |||| ||||||||||||||||||||||||||    
T  29692439 gtattggattgggatctgggagtgtgctcctcctcaaagtct 29692398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 30883263 - 30883210
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||| ||||| |||||||||| |||  ||||||||||||||||||||| ||||    
T  30883263 gttggtctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtct 30883210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 35547073 - 35547024
Alignment:
Q  117 ggtatattagtaaaaatatctaaaaagttatattaattaatgattatatt 166  Q
    |||||||| |||||||||| |||||||||||| ||||||| |||| ||||    
T  35547073 ggtatattcgtaaaaatatttaaaaagttataataattaacgattttatt 35547024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 43594540 - 43594316
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagt---gggtgtannnnnnn- 111  Q
    |||||||||||||||| | ||||||||||||| ||||| || |||||||| |||| ||||||||||||||||||||||||||   |||||||            
T  43594540 aaatgtcacatctttttaagtatagttattgcataaaaaacatttttatctttcacttaatgattctctttttaatcttagtagtgggtgtatttttttt 43594441  T
Q  112 atgagggtatattagtaaaaatatctaaaaagttatattaattaatgattatattggtgttggcctagttgtattggctttggatttgggagtgtgctcc 211  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||  ||||||||| |||| | ||| |||| |||    
T  43594440 atgagggtatattagtaaaaatatttaaaaagttac-ttaattaatgattatattggtgttggcctagtgatattggcttaggatctaggaatgtgttcc 43594342  T
Q  212 tcctcaaagtctta-gttcgattctc 236  Q
    ||||||| |||| | |||||||||||    
T  43594341 tcctcaaggtctcaggttcgattctc 43594316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 36054828 - 36054916
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 104  Q
    |||||||||| ||||||||||||| |||||| ||||||||| ||| || || | | |||||| || |||||||||| ||||||| ||||    
T  36054828 aaatgtcacaacttttaaggtatatttattgtttaaaagacttttataccccttaattaatgtttgtctttttaatattagtggatgta 36054916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 30112561 - 30112486
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaat 91  Q
    ||||||||||  ||||||||| ||||||||||||||||||  ||||||||| || |||||||  | ||||||||||    
T  30112561 aaatgtcacaaattttaaggtgtagttattgcttaaaagatttttttatccctcgtttaatgtatgtctttttaat 30112486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 8251248 - 8251330
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtg 98  Q
    |||| ||||| |||||||||| || |||||||||||||||| |||||  || | |||||||| || |||||||||| ||||||    
T  8251248 aaatatcacaacttttaaggtgtaattattgcttaaaagacctttttccccattatttaatggttgtctttttaatattagtg 8251330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 19703552 - 19703482
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctccct 239  Q
    ||||||||||| |||||||||| |||  || |||||||||||||||||| |||| | ||||||||||||||    
T  19703552 gttggcctagtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctccct 19703482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 35690131 - 35690053
Alignment:
Q  168 gtgttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctccctgatgtc 245  Q
    ||||||||||||| |||||||||| |||| |||| || ||||||||||||| |||| | ||||||||||| ||| ||||    
T  35690131 gtgttggcctagtggtattggcttgggatctgggtgtttgctcctcctcaaggtctcaggttcgattctctctggtgtc 35690053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 2203503 - 2203556
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||||| ||||    
T  2203503 gttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtct 2203556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 30483949 - 30483896
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||||| ||| |||||||||| |||| |||||||||||||||||||| |||||    
T  30483949 gttggcccagtggtattggcttgggatatgggagtgtgctcctcctcagagtct 30483896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 44780179 - 44780126
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||||||||| | |||||||| ||| |||||||||||||||||||||| ||||    
T  44780179 gttggcctagtggcattggcttgggacttgggagtgtgctcctcctcaaggtct 44780126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 16852351 - 16852419
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctcc 237  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||| | |||| | ||||||||||||    
T  16852351 gttggcctagtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctcc 16852419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 3624591 - 3624658
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctc 236  Q
    ||||||||||| |||||||||| |||  |||||||||||||||| |||| |||| | |||||||||||    
T  3624591 gttggcctagtggtattggcttgggacctgggagtgtgctcctcttcaaggtctcaggttcgattctc 3624658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 1445365 - 1445453
Alignment:
Q  16 aaatgtcacatcttttaaggtata-gttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 104  Q
    |||||||||| |||||||||| || ||||||||||||| ||| ||| ||||| | |||||||| |||||||||  || |||||| |||||    
T  1445365 aaatgtcacaacttttaaggtgtaagttattgcttaaatgacttttctatccct-atttaatgtttctcttttagatattagtgagtgta 1445453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 2520159 - 2520102
Alignment:
Q  112 atgagggtatattagtaaaaatatctaaaaagttatattaattaatgattatattggt 169  Q
    |||||| |||||| ||||||||||  ||||||||| |||||||||||| | |||||||    
T  2520159 atgaggatatatttgtaaaaatattcaaaaagttacattaattaatgaatgtattggt 2520102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 6569836 - 6569791
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcct 215  Q
    |||||||||||  ||||||||| |||| ||||||||||||||||||    
T  6569836 gttggcctagtgatattggcttgggatctgggagtgtgctcctcct 6569791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 11819787 - 11819840
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    |||| |||||| |||| ||||| ||| |||||||||||||||||||||| ||||    
T  11819787 gttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtct 11819840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 40591741 - 40591786
Alignment:
Q  168 gtgttggcctagttgtattggctttggatttgggagtgtgctcctc 213  Q
    |||||||||| || |||||||||| ||| |||||||||||||||||    
T  40591741 gtgttggcctggtggtattggcttcggacttgggagtgtgctcctc 40591786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 46572422 - 46572255
Alignment:
Q  16 aaatgtcacatctttt-aaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgtannnnnnnatg 114  Q
    |||| ||||||||||| |||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||| |||||| |||||       |||    
T  46572422 aaatatcacatctttttaaggtatagttatttcttaaaagatatttttatccttcatttaatgattctctttttaattttagtgagtgtatttttttatg 46572323  T
Q  115 agggtatat---tagtaaaaatatctaaaaagttatattaattaatgattatattggtgttggcctag 179  Q
    |||||||||   || |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46572322 agggtatattaataataaaaatatctaaaaagttacattaattaatgattatattggtgttggcctag 46572255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 9183373 - 9183236
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta-nnnnnnnatg 114  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||         |     
T  9183373 aaatgtcacatcttttaaggtatagttattgcttagaagacatttttatccttcatttaatgattctctttttgatcttagtgggtgtattttttttttt 9183274  T
Q  115 agggtatattagtaaaaatatctaaaaagttatattaa 152  Q
    |||||||||||||||||||||||||||||||| |||||    
T  9183273 agggtatattagtaaaaatatctaaaaagttacattaa 9183236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 41508124 - 41508200
Alignment:
Q  28 ttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 104  Q
    ||||||||| ||||||||||||||||||| |||||| || | |||||||| || |||||||||| ||||||||||||    
T  41508124 ttttaaggtgtagttattgcttaaaagacttttttaccccttatttaatgtttgtctttttaatattagtgggtgta 41508200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 6549205 - 6549131
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaa 90  Q
    |||| ||||| ||||||||||||||||||| |||||||||  ||||||||||||| |||||| || |||||||||    
T  6549205 aaatatcacaacttttaaggtatagttatttcttaaaagatttttttatccttcacttaatggttttctttttaa 6549131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 43590918 - 43590988
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctccct 239  Q
    |||||||| || |||||||||| ||| |||||||||||||||||||||| |||| | ||||||||||||||    
T  43590918 gttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctcaggttcgattctccct 43590988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 25021400 - 25021347
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||||||||||    
T  25021400 gttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaagtct 25021347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 26459475 - 26459408
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctc 236  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||||| |||| | |||||||||||    
T  26459475 gttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctc 26459408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 18363707 - 18363760
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||||||||| |||| |||||  ||||||||||||||||||||||||| ||||    
T  18363707 gttggcctagtggtataggcttgagatttgggagtgtgctcctcctcaaggtct 18363760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 41519329 - 41519276
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||||||||| |||||| ||| |||||| ||||||||||||||||||| ||||    
T  41519329 gttggcctagtggtattgacttgggatttaggagtgtgctcctcctcaaggtct 41519276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 17113808 - 17113880
Alignment:
Q  172 tggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct-tagttcgattctccctgatg 243  Q
    |||||||||||||||||||| | |  |||||||||||| |||||||| ||||  |||||||||||| ||||||    
T  17113808 tggcctagttgtattggcttagaacctgggagtgtgcttctcctcaaggtctcaagttcgattctctctgatg 17113880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 46101348 - 46101260
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 104  Q
    |||||||| | |||||||| | |||||||| || ||||||| ||| || || ||||||||||||| || ||||||| ||||||| ||||    
T  46101348 aaatgtcataacttttaagttgtagttattactcaaaagacttttctacccctcatttaatgattgtcattttaatattagtggatgta 46101260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 20949194 - 20949241
Alignment:
Q  112 atgagggtatattagtaaaaatatctaaaaagttatattaattaatga 159  Q
    ||||||||||||| |||||||||| |||||||||| |||||| |||||    
T  20949194 atgagggtatatttgtaaaaatatttaaaaagttacattaatcaatga 20949241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 23735286 - 23735239
Alignment:
Q  176 ctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||| |||||||||| | |||||||| ||||||||||||||||||||    
T  23735286 ctagtggtattggcttagaatttgggattgtgctcctcctcaaagtct 23735239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 34470095 - 34470158
Alignment:
Q  41 ttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 104  Q
    ||||| |||||||||  ||||||||| || ||||||| ||||||||||||| |||||| |||||    
T  34470095 ttattacttaaaagaattttttatccctcgtttaatgcttctctttttaatattagtgagtgta 34470158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 9871334 - 9871284
Alignment:
Q  187 ggctttggatttgggagtgtgctcctcctcaaagtcttag-ttcgattctc 236  Q
    ||||| |||||||||||||||||||||||| |||||| || ||||||||||    
T  9871334 ggcttgggatttgggagtgtgctcctcctcgaagtctcagattcgattctc 9871284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 19553465 - 19553533
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctccc 238  Q
    |||||||| || |||||||||| |||  ||||||||||||||||||||| |||||| |||| ||||||||    
T  19553465 gttggcctggtggtattggctt-ggacctgggagtgtgctcctcctcaaggtcttaggttcaattctccc 19553533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 20949085 - 20949165
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagt 97  Q
    |||||||| | |||||||||| ||||||||||||||| ||  ||||||||| | ||||||||  |||||||| ||| |||||    
T  20949085 aaatgtcataacttttaaggtgtagttattgcttaaatgatttttttatccct-atttaatgtctctcttttgaatattagt 20949165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 21854571 - 21854612
Alignment:
Q  182 gtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    |||||||||  |||| ||||||||||||||||||||||||||    
T  21854571 gtattggctagggatctgggagtgtgctcctcctcaaagtct 21854612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 20335884 - 20335820
Alignment:
Q  182 gtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctccctgatgtc 245  Q
    |||||||||| ||| |||||||||||||||||||| | |||| | ||||||||||| | ||||||    
T  20335884 gtattggcttgggacttgggagtgtgctcctcctcgaggtctcaggttcgattctcaccgatgtc 20335820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 25956357 - 25956282
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctccctgatgtc 245  Q
    ||||||||||| |||||||||| |||  | ||||||||||||| ||||| |||||| |||| |||||||||| ||||    
T  25956357 gttggcctagtggtattggcttgggaccttggagtgtgctcct-ctcaaggtcttaggttcaattctccctggtgtc 25956282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 42836066 - 42836018
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaa 218  Q
    ||||||||||| |||||||||| |||  ||||||||||||| |||||||    
T  42836066 gttggcctagtggtattggcttgggacctgggagtgtgctcttcctcaa 42836018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 46341509 - 46341549
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagac 56  Q
    |||| ||||| |||||||||| |||||||||||||||||||    
T  46341509 aaatatcacaacttttaaggtgtagttattgcttaaaagac 46341549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 48984188 - 48984144
Alignment:
Q  176 ctagttgtattggctttggatttgggagtgtgctcctcctcaaag 220  Q
    ||||| |||| ||||| ||| ||||||||||||||||||||||||    
T  48984188 ctagtggtataggcttgggacttgggagtgtgctcctcctcaaag 48984144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 51285 - 51373
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 104  Q
    |||||||||| |||||||||| || |||||||||||||||  ||||||||| ||||||||| |||||||||||||| ||||| ||||||    
T  51285 aaatgtcacaacttttaaggtgtatttattgcttaaaagatttttttatccctcatttaataattctctttttaattttagttggtgta 51373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 51395 - 51452
Alignment:
Q  112 atgagggtatattagtaaaaatatctaaaaagttatattaattaatgattatattggt 169  Q
    ||||||||||| | ||||||||||  |||| |||| |||||||||||||| |||||||    
T  51395 atgagggtataattgtaaaaatattcaaaatgttacattaattaatgattgtattggt 51452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 3034 - 3122
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 104  Q
    |||||||||| |||||||||| ||||||||| ||||||||| ||| ||||| ||||| ||| |||||||||||||| ||||||| ||||    
T  3034 aaatgtcacaacttttaaggtgtagttattgtttaaaagacttttctatccctcattcaataattctctttttaatattagtggatgta 3122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 18838764 - 18838851
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 104  Q
    |||||||| | ||||||||||||| |||||| ||||||||| ||| || ||| |||||||||||| |||||||||| ||||||||||||    
T  18838764 aaatgtcataacttttaaggtataattattgtttaaaagacttttctaccct-catttaatgattatctttttaatattagtgggtgta 18838851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 16572264 - 16572345
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagt 97  Q
    |||||||||| |||||||||| |||||||||||||| |||  ||||||||| ||||||||||| | | |||||||| |||||    
T  16572264 aaatgtcacaacttttaaggtgtagttattgcttaacagaattttttatccctcatttaatgactgtatttttaatattagt 16572345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 31707480 - 31707397
Alignment:
Q  21 tcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 104  Q
    ||||| |||||||||| ||||||||||||| ||||| ||| || || | |||||||| || |||||||||| ||||||||||||    
T  31707480 tcacaacttttaaggtgtagttattgcttagaagacttttctaccccttatttaatgtttgtctttttaatattagtgggtgta 31707397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 49576959 - 49576892
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctc 236  Q
    |||||||| || |||||||||||||| |||||||||||||||||||||| |||| | |||||||||||    
T  49576959 gttggcctggtggtattggctttggacttgggagtgtgctcctcctcaaggtctcaggttcgattctc 49576892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 37109416 - 37109349
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctc 236  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||||| |||| | |||||||||||    
T  37109416 gttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctc 37109349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 42312539 - 42312492
Alignment:
Q  21 tcacatcttttaaggtatagttattgcttaaaagacgtttttatcctt 68  Q
    ||||| |||||||||||||||||||||||||||||| ||| |||||||    
T  42312539 tcacaacttttaaggtatagttattgcttaaaagacttttctatcctt 42312492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 19680852 - 19680786
Alignment:
Q  171 ttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctc 236  Q
    |||||||||| ||||| |||| ||| |||||||||||||| ||||||| |||||| |||||||||||    
T  19680852 ttggcctagtggtattcgcttgggacttgggagtgtgctcttcctcaaggtcttaggttcgattctc 19680786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 13015444 - 13015505
Alignment:
Q  176 ctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctc 236  Q
    ||||| |||||||||| ||| |||||||||||||||||||| |||||| | |||||||||||    
T  13015444 ctagtggtattggcttgggacttgggagtgtgctcctcctcgaagtctcatgttcgattctc 13015505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 38869783 - 38869832
Alignment:
Q  174 gcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||||| |||||||||| |||| ||||||||||||||||||||| ||||    
T  38869783 gcctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtct 38869832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 4249189 - 4249241
Alignment:
Q  171 ttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    |||||||||| |||| ||||| |||||| ||||||||||||||||||| ||||    
T  4249189 ttggcctagtggtataggcttgggattttggagtgtgctcctcctcaaggtct 4249241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 31759717 - 31759657
Alignment:
Q  176 ctagttgtattggctttggatttgggagtgtgctcctcctcaaagtcttag-ttcgattct 235  Q
    ||||| |||||||||| ||| |||||||||||||||||||||| |||| || |||||||||    
T  31759717 ctagtggtattggcttgggacttgggagtgtgctcctcctcaaggtctcagattcgattct 31759657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 37274525 - 37274457
Alignment:
Q  170 gttggcctagttgta-ttggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctc 236  Q
    ||||||||||| ||| ||||||| |||  ||||||||||||||||||||| |||||| |||||||||||    
T  37274525 gttggcctagtcgtaattggcttgggacctgggagtgtgctcctcctcaaggtcttaggttcgattctc 37274457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 38216017 - 38216077
Alignment:
Q  27 cttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttt 87  Q
    ||||||||||||| ||||||| |||||||  ||| |||||||||||||||| || ||||||    
T  38216017 cttttaaggtatatttattgcataaaagatttttctatccttcatttaatgtttgtctttt 38216077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 7292863 - 7292796
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctc 236  Q
    ||||| ||||| |||||||||| | |  |||||||||||||||||||||||||| | |||||||||||    
T  7292863 gttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaaagtctcaggttcgattctc 7292796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 18838873 - 18838931
Alignment:
Q  112 atgagggtatattagtaaaaatatct-aaaaagttatattaattaatgattatattggt 169  Q
    ||||||||||||| |||||||||  | ||||| ||||||||||||||||||| ||||||    
T  18838873 atgagggtatatttgtaaaaataattcaaaaatttatattaattaatgattacattggt 18838931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 19238642 - 19238596
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctc 216  Q
    |||||||| || |||||||||| ||| ||||||||||||||||||||    
T  19238642 gttggcctggtggtattggcttgggacttgggagtgtgctcctcctc 19238596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 29312317 - 29312272
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcct 215  Q
    ||||||||||| |||||||||| |||| ||||||||| ||||||||    
T  29312317 gttggcctagtggtattggcttgggatgtgggagtgttctcctcct 29312272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 31707378 - 31707321
Alignment:
Q  112 atgagggtatattagtaaaaatatctaaaaagttatattaattaatgattatattggt 169  Q
    ||||||||||||| ||||||||||  ||||||||| | |||||||||| | |||||||    
T  31707378 atgagggtatatttgtaaaaatattcaaaaagttacactaattaatgagtgtattggt 31707321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 31826620 - 31826673
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    |||| |||||| |||| ||||| ||||||| |||||||||||||||||| ||||    
T  31826620 gttgccctagtggtataggcttgggatttgcgagtgtgctcctcctcaaggtct 31826673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 8030264 - 8030216
Alignment:
Q  175 cctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    |||||| |||| ||||| ||| |||||||||||||||||||||| ||||    
T  8030264 cctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtct 8030216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 51250587 - 51250539
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaa 218  Q
    |||||||| || |||||||||| |||| |||||||||||||| ||||||    
T  51250587 gttggcctggtggtattggcttgggatctgggagtgtgctccgcctcaa 51250539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 629 - 550
Alignment:
Q  20 gtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgg 99  Q
    |||||| | |||||||| ||||||||| ||||||||| ||||||||| ||||||||||||| || ||||||| |||||||    
T  629 gtcacaacatttaaggtgtagttattgtttaaaagacttttttatccctcatttaatgattgtcgttttaatattagtgg 550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 28650330 - 28650192
Alignment:
Q  16 aaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgtannnnnnnatga 115  Q
    |||||| ||| |||||||||| ||||||||  ||||||||| ||| |||  || |||||||| ||||||||||||| ||||| ||||||       ||||    
T  28650330 aaatgtaacaacttttaaggtgtagttattatttaaaagacttttctatatttaatttaatgcttctctttttaatattagtaggtgta---ttttatga 28650234  T
Q  116 gggtatattagtaaaaatatctaaaaagttatattaattaat 157  Q
    |||||||||  |||||||||  ||||||||| ||| ||||||    
T  28650233 gggtatattcataaaaatattaaaaaagttaaattcattaat 28650192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 16918643 - 16918587
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtcttag 226  Q
    ||||||||||| ||||||| || |||| ||||||||||||||||||||| |||||||    
T  16918643 gttggcctagtggtattggtttgggatctgggagtgtgctcctcctcaaggtcttag 16918587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 38214130 - 38214206
Alignment:
Q  21 tcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagt 97  Q
    ||||| |||||||||| || |||||| ||||||||| ||| ||||| |||||||||  ||||||||||||| |||||    
T  38214130 tcacaacttttaaggtgtatttattgtttaaaagacttttatatccctcatttaatacttctctttttaatattagt 38214206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 1435075 - 1435150
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtcttagttcgattctccctgatgtc 245  Q
    |||||| |||| ||| |||||| |||||| |||||||||| |||||||| |||| |||||||||||| ||| ||||    
T  1435075 gttggcatagtggtactggcttgggatttaggagtgtgcttctcctcaaggtctcagttcgattctctctggtgtc 1435150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 19285895 - 19285974
Alignment:
Q  19 tgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtg 98  Q
    |||||||  ||||||||| |||||||||| |||||||| ||| |||||||||||||||  || |||||| ||| ||||||    
T  19285895 tgtcacaagttttaaggtgtagttattgcataaaagacttttatatccttcatttaatatttgtcttttcaatattagtg 19285974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 42327460 - 42327393
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctc 236  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||||| |||| | |||||||||||    
T  42327460 gttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctc 42327393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 23052588 - 23052518
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctccct 239  Q
    |||||||| || |||||||||| ||| ||||||||||||| |||||||| |||| | ||||||||||||||    
T  23052588 gttggcctggtggtattggcttgggacttgggagtgtgcttctcctcaaggtctcaggttcgattctccct 23052518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 29503282 - 29503351
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctccc 238  Q
    ||||||||||| ||||||| || |||  ||||||||||||||||||||| |||| | |||||||||||||    
T  29503282 gttggcctagtggtattggtttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctccc 29503351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 1729827 - 1729883
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtcttag 226  Q
    ||||| ||||| |||||||||| ||| |||||||||||||||||||| | |||||||    
T  1729827 gttgggctagtggtattggcttgggacttgggagtgtgctcctcctctaggtcttag 1729883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 42602565 - 42602621
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtcttag 226  Q
    ||||||||||| |||||||||| |||  ||||||||||||||| ||||| |||||||    
T  42602565 gttggcctagtggtattggcttgggacctgggagtgtgctccttctcaaggtcttag 42602621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 39063725 - 39063642
Alignment:
Q  21 tcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 104  Q
    ||||| |||||||||| || |||||| ||||||||| ||| |||   |||||||||  ||||||||||||| |||||| |||||    
T  39063725 tcacaacttttaaggtgtatttattgtttaaaagacttttatattgctcatttaatacttctctttttaatattagtgtgtgta 39063642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 42922425 - 42922475
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaag 220  Q
    ||||||||||| |||||||||| | |  |||||||||||||||||||||||    
T  42922425 gttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaag 42922475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 11251098 - 11251151
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    |||||| |||| |||||||||| ||| |||| ||||||||||||||||| ||||    
T  11251098 gttggcttagtggtattggcttgggacttggaagtgtgctcctcctcaaggtct 11251151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 21794959 - 21795016
Alignment:
Q  112 atgagggtatattagtaaaaatatctaaaaagttatattaattaatgattatattggt 169  Q
    ||||||||||||| ||||||||||  ||||||||   ||||| |||||||||||||||    
T  21794959 atgagggtatatttgtaaaaatattcaaaaagtttctttaatcaatgattatattggt 21795016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 23465974 - 23465933
Alignment:
Q  182 gtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||||| || |||||||||||| ||||||||||||||||||    
T  23465974 gtattggtttaggatttgggagtatgctcctcctcaaagtct 23465933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 34041653 - 34041600
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||||||||| |||||| ||| |||| || |||||||||||||||||| ||||    
T  34041653 gttggcctagtggtattgacttaggatctgagagtgtgctcctcctcaaggtct 34041600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 37480086 - 37480155
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctccc 238  Q
    |||||||| || |||||||||| |||  || |||||||||||||||||| |||| | |||||||||||||    
T  37480086 gttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctccc 37480155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 38496497 - 38496573
Alignment:
Q  28 ttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 104  Q
    ||||||||||||||||||| ||||||||| ||| || || | |||||| | || | |||||||| ||||| ||||||    
T  38496497 ttttaaggtatagttattgtttaaaagacctttctaccccttatttaacgtttgtatttttaatattagtaggtgta 38496573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 6984 - 6931
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||||||||| |||||||||| ||| | |||||||||||||||||||||||||    
T  6984 gttggcctagtggtattggcttgggactggggagtgtgctcctcctcaaagtct 6931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 2523 - 2466
Alignment:
Q  182 gtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctccc 238  Q
    ||||||| ||||||| ||||||||||||||||||||| |||| | |||||||||||||    
T  2523 gtattggttttggatctgggagtgtgctcctcctcaaggtctcaggttcgattctccc 2466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1367 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 903 - 838
Alignment:
Q  172 tggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctc 236  Q
    |||||| || |||||||||| |||| ||||| ||||||||||||| |||||| | |||||||||||    
T  903 tggcctggtggtattggcttgggatctgggaatgtgctcctcctcgaagtctcaggttcgattctc 838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 11541 - 11606
Alignment:
Q  172 tggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctc 236  Q
    |||||| || |||||||||| |||| ||||||||||||||||||| | |||| | |||||||||||    
T  11541 tggcctggtggtattggcttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattctc 11606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 5218 - 5271
Alignment:
Q  184 attggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctc 236  Q
    |||||||| ||| ||||||||||||||||||| ||||| ||| |||||||||||    
T  5218 attggcttgggacttgggagtgtgctcctccttaaagttttaggttcgattctc 5271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 15842 - 15789
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    |||||||| || |||||||||| |||||| ||||| ||||||||||||| ||||    
T  15842 gttggcctggtggtattggcttgggattttggagtatgctcctcctcaaggtct 15789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 95036 - 94983
Alignment:
Q  170 gttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtct 223  Q
    ||||||||||| |||||||||| | |  ||||||||||||||||||||| ||||    
T  95036 gttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtct 94983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 13099 - 13035
Alignment:
Q  182 gtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctccctgatgtc 245  Q
    ||||||||||  ||| ||||||||||||||||||||| |||| | ||||||||||| | ||||||    
T  13099 gtattggcttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattctctccgatgtc 13035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 20028 - 19960
Alignment:
Q  169 tgttggcctagttgtattggctttggatttgggagtgtgctcctcctcaaagtctta-gttcgattctc 236  Q
    |||||||||||| |||||||||| | |  ||||||| ||||||||||||| |||| | |||||||||||    
T  20028 tgttggcctagtggtattggcttggaacctgggagtatgctcctcctcaaggtctcaggttcgattctc 19960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University