View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_58 (Length: 250)
Name: NF7710_low_58
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_58 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 8438903 - 8439143
Alignment:
| Q |
9 |
atgaatgtgatgatcggacataggggcaaacccctatttattttatttctaagttttgtgcaggttgtttctatcttttacttagataatcgtttcaagc |
108 |
Q |
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| T |
8438903 |
atgaatgtgatgatcagacataggggcaaacccctatttattgtatttctaagttttgtgcaggttgtttctatcttt-acttagataatcgtttcaagc |
8439001 |
T |
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| Q |
109 |
caatgatattgtaaataagcttaaggaattcacttctttcagctgggacccaatccattttaaaataattgtaaaagatgtgttaagtggtgattttatc |
208 |
Q |
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| T |
8439002 |
caatgatattgtaaataagcttaaggaattcacttctttcagctgggacccaatccattttaaaataattgtaaaagatttgttcagtggtgattttatc |
8439101 |
T |
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| Q |
209 |
actaataatagaaaaggaaaataatgatattgcattgatcaa |
250 |
Q |
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| T |
8439102 |
actaataatagaaaaggaaaataatgatattgcattgatcaa |
8439143 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 31947416 - 31947337
Alignment:
| Q |
170 |
aaaataattgtaaaagatgtgttaagtggtgattttatcactaataata--gaaaaggaaaataatgatattgcattgat |
247 |
Q |
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| T |
31947416 |
aaaatgattgtgaaagatatgttcaatggtgattttgtcactaataataatagaaaggaaaacaatgatattgcattgat |
31947337 |
T |
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