View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_6 (Length: 590)
Name: NF7710_low_6
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 15 - 516
Target Start/End: Original strand, 29990927 - 29991433
Alignment:
| Q |
15 |
gacatcaatagaacaaaaaggacaaaagatggtcctaaattaaacggtctcattggactcaacgtaaggatgtaataatcccaaatatagtatgggggtt |
114 |
Q |
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| T |
29990927 |
gacatcaatagaacaaaaaggacaaaagatggtcctaaattaaacggtctcattggactcaacgtaaggatgtaataatcccaaatatattatgggg-tt |
29991025 |
T |
|
| Q |
115 |
agtatttcatacaccatacattgatatattagcaataacacagtccacattttaaaactcaaaagagtaaattttttgtggaaaagaaagaagatgtctg |
214 |
Q |
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| T |
29991026 |
agtatttcatataccatacattgatatattagcaataacacagtccatattttaaaactcaaaagagtaaattttttgtggaaaagaaagaagatgtctg |
29991125 |
T |
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| Q |
215 |
gtcaacttgagcatgagttagagctgaatgtaccagcaagtgaagcatgggatctctttggcaccattggtattggaaaactcgttgaggcagagatgcc |
314 |
Q |
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| T |
29991126 |
gtcaacttgagcatgaattagagctgaatgtaccagcaagtgaagcatgggatctctttggcaccattggtattggaaaactcgttgaggcagagatgcc |
29991225 |
T |
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| Q |
315 |
tgaattgtttcagaaggtggagctgattgaaggagatggaggggttggaactattctcaaactcacattcactccaggtc------attcatatattatt |
408 |
Q |
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| T |
29991226 |
tgaattgtttcagaaggtggagctgattgaaggagatggaggggttggaactattctcaaactcacattcactccaggtcattcatattcatatattatt |
29991325 |
T |
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| Q |
409 |
tatgtattattttttccagttatcctaacacaaccatacataaaaacctataatacttatatagatctttctaatatagatgacacttattctatgtaaa |
508 |
Q |
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| T |
29991326 |
tatgtattattttttacagttagcctaacacaaccatacataaaaacctataatacttatatagatctttctaagatagatgacacttattctatgtaaa |
29991425 |
T |
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| Q |
509 |
agactttt |
516 |
Q |
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| T |
29991426 |
agactttt |
29991433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 205 - 397
Target Start/End: Original strand, 29986750 - 29986942
Alignment:
| Q |
205 |
aagatgtctggtcaacttgagcatgagttagagctgaatgtaccagcaagtgaagcatgggatctctttggcaccattggtattggaaaactcgttgagg |
304 |
Q |
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||||||| |||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| |
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| T |
29986750 |
aagatgtttggtcaacttgagcatgagttagagctgcacgtgccagcaagtgaagcatgggatctctttggcactcttgctattggaaaggtcgttgagg |
29986849 |
T |
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| Q |
305 |
cagagatgcctgaattgtttcagaaggtggagctgattgaaggagatggaggggttggaactattctcaaactcacattcactccaggtcatt |
397 |
Q |
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| T |
29986850 |
aagagatgcctgaaagatttcagaaggtggagctaattgaaggagatggaggagttgggactattctcaaactcacattcactccaggtcatt |
29986942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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