View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_61 (Length: 237)
Name: NF7710_low_61
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 24996535 - 24996326
Alignment:
| Q |
19 |
catcaagacgtaacggcgacaacgtgaaagagaatggtggaggagatgggctcgccgagagaaaatagataagggtgagagaaagaggagat--gagtga |
116 |
Q |
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| T |
24996535 |
catcaagacgtaacggcgacgacgtgaaagagaatggtggaggagatgggctcaccgagagaaaatagataagggtgagagaaagaggagatgagagtga |
24996436 |
T |
|
| Q |
117 |
aagaatttacag---nnnnnnnnnnnnggtatcacatggattatgccaaaannnnnnnattaattatgccacacaagggtggtagatgagtggtagccac |
213 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24996435 |
aagaatttacagtttttatttttttttggtatcacatggattatgccaatttttttttattaattatgccacacaagggtggtagatgaatggtagccac |
24996336 |
T |
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| Q |
214 |
ctgggatgat |
223 |
Q |
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||||| |||| |
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| T |
24996335 |
ctggggtgat |
24996326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 1086361 - 1086455
Alignment:
| Q |
19 |
catcaagacgtaacggcgacaacgtgaaagagaatggtggaggagatgggctcgccgagagaaaatagataagggtgagagaaagaggagatgag |
113 |
Q |
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||||||||||||||| |||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1086361 |
catcaagacgtaacgacgacggcgtcaaagagaatggtggaggagatgggctcgtcgagagaaaatagataagggtgagagaaagaggagatgag |
1086455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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