View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7710_low_62 (Length: 223)

Name: NF7710_low_62
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7710_low_62
NF7710_low_62
[»] chr7 (32 HSPs)
chr7 (1-210)||(34195985-34196192)
chr7 (1-210)||(34194526-34194734)
chr7 (2-210)||(7369279-7369486)
chr7 (2-210)||(23765151-23765352)
chr7 (1-210)||(16439470-16439676)
chr7 (1-210)||(30241552-30241753)
chr7 (1-210)||(16036807-16037008)
chr7 (1-210)||(16051534-16051735)
chr7 (1-130)||(16454408-16454535)
chr7 (8-210)||(10839241-10839442)
chr7 (3-210)||(15854149-15854349)
chr7 (43-94)||(10851967-10852018)
chr7 (43-94)||(15004627-15004678)
chr7 (44-94)||(13895182-13895232)
chr7 (2-89)||(2150173-2150260)
chr7 (2-89)||(2165384-2165471)
chr7 (3-130)||(4055413-4055538)
chr7 (2-89)||(10921320-10921407)
chr7 (2-89)||(16498465-16498552)
chr7 (2-89)||(16507772-16507859)
chr7 (2-89)||(16522876-16522963)
chr7 (1-89)||(13736013-13736102)
chr7 (1-89)||(11414240-11414330)
chr7 (1-89)||(11429223-11429313)
chr7 (1-89)||(36879004-36879092)
chr7 (2-89)||(4186467-4186554)
chr7 (2-89)||(18627147-18627236)
chr7 (2-89)||(48217306-48217395)
chr7 (1-89)||(2969048-2969136)
chr7 (141-210)||(10851862-10851926)
chr7 (141-210)||(13895274-13895338)
chr7 (141-210)||(15004721-15004785)
[»] chr8 (13 HSPs)
chr8 (1-210)||(28503701-28503910)
chr8 (43-97)||(15018187-15018240)
chr8 (1-89)||(21337108-21337198)
chr8 (1-89)||(21377069-21377159)
chr8 (43-94)||(11342453-11342504)
chr8 (1-89)||(15324594-15324684)
chr8 (1-89)||(15504963-15505053)
chr8 (1-89)||(28263110-28263200)
chr8 (43-94)||(21965645-21965695)
chr8 (43-94)||(22070706-22070756)
chr8 (139-210)||(15018084-15018150)
chr8 (2-89)||(5516282-5516369)
chr8 (141-210)||(11342547-11342611)
[»] chr5 (36 HSPs)
chr5 (1-210)||(28898239-28898446)
chr5 (1-210)||(28934634-28934841)
chr5 (1-210)||(30465592-30465794)
chr5 (7-210)||(22898991-22899187)
chr5 (1-210)||(24612118-24612323)
chr5 (1-210)||(24671744-24671949)
chr5 (1-210)||(24708520-24708725)
chr5 (1-210)||(24741514-24741719)
chr5 (1-210)||(24754283-24754488)
chr5 (3-210)||(22268722-22268924)
chr5 (3-130)||(20579985-20580112)
chr5 (141-210)||(25195591-25195656)
chr5 (141-210)||(25210953-25211018)
chr5 (141-210)||(25275105-25275170)
chr5 (43-97)||(19863750-19863803)
chr5 (43-97)||(21501341-21501394)
chr5 (43-97)||(37294690-37294743)
chr5 (1-89)||(20193517-20193605)
chr5 (2-89)||(24947715-24947802)
chr5 (2-89)||(24980580-24980667)
chr5 (1-89)||(7816250-7816339)
chr5 (141-187)||(27285673-27285719)
chr5 (2-86)||(23887824-23887908)
chr5 (2-89)||(24692631-24692718)
chr5 (2-89)||(3944051-3944137)
chr5 (2-86)||(23902467-23902551)
chr5 (43-97)||(25195700-25195754)
chr5 (43-97)||(25211062-25211116)
chr5 (43-97)||(25275214-25275268)
chr5 (38-92)||(37750718-37750772)
chr5 (38-92)||(37765963-37766017)
chr5 (144-209)||(11545867-11545927)
chr5 (144-209)||(11559926-11559986)
chr5 (149-210)||(21501238-21501295)
chr5 (2-89)||(22347738-22347825)
chr5 (46-97)||(27285577-27285629)
[»] chr1 (25 HSPs)
chr1 (1-210)||(16663077-16663284)
chr1 (1-210)||(31447464-31447673)
chr1 (1-210)||(20362123-20362327)
chr1 (1-210)||(20548584-20548788)
chr1 (3-210)||(16197527-16197726)
chr1 (2-189)||(16405779-16405963)
chr1 (3-210)||(16212536-16212735)
chr1 (5-189)||(20329659-20329842)
chr1 (5-92)||(20343203-20343289)
chr1 (3-189)||(21730497-21730680)
chr1 (3-91)||(21731625-21731711)
chr1 (41-210)||(9192799-9192966)
chr1 (1-97)||(15816205-15816300)
chr1 (43-97)||(16230789-16230842)
chr1 (2-89)||(18293713-18293800)
chr1 (2-89)||(21481687-21481774)
chr1 (2-89)||(21886833-21886920)
chr1 (2-89)||(26798232-26798319)
chr1 (1-89)||(5137884-5137973)
chr1 (143-189)||(20343340-20343386)
chr1 (2-89)||(21505913-21506000)
chr1 (43-94)||(15434317-15434367)
chr1 (2-89)||(4147267-4147355)
chr1 (139-210)||(16230686-16230752)
chr1 (149-210)||(20456589-20456645)
[»] scaffold0393 (1 HSPs)
scaffold0393 (8-210)||(7107-7306)
[»] chr6 (31 HSPs)
chr6 (1-210)||(12963693-12963901)
chr6 (1-210)||(14854637-14854842)
chr6 (1-210)||(28197034-28197240)
chr6 (8-189)||(4112550-4112728)
chr6 (1-210)||(25179533-25179738)
chr6 (8-210)||(17028998-17029192)
chr6 (8-92)||(12048060-12048144)
chr6 (3-189)||(24376771-24376958)
chr6 (2-95)||(20134664-20134756)
chr6 (2-95)||(22198113-22198205)
chr6 (43-97)||(924410-924463)
chr6 (43-97)||(8765531-8765584)
chr6 (152-210)||(12048198-12048256)
chr6 (43-97)||(20424652-20424705)
chr6 (144-210)||(17086728-17086790)
chr6 (141-207)||(30720731-30720793)
chr6 (2-89)||(3043683-3043770)
chr6 (1-89)||(24295116-24295204)
chr6 (1-89)||(24309134-24309222)
chr6 (2-89)||(12621561-12621648)
chr6 (139-210)||(924307-924373)
chr6 (2-89)||(22923653-22923741)
chr6 (2-89)||(22939365-22939453)
chr6 (2-89)||(23861810-23861898)
chr6 (43-92)||(17086630-17086678)
chr6 (2-89)||(15401877-15401964)
chr6 (2-89)||(15413664-15413751)
chr6 (2-89)||(15429257-15429344)
chr6 (2-89)||(19900405-19900492)
chr6 (141-210)||(20156257-20156321)
chr6 (141-210)||(22176511-22176575)
[»] chr4 (33 HSPs)
chr4 (1-210)||(17241694-17241902)
chr4 (8-210)||(15387264-15387461)
chr4 (1-210)||(17095017-17095229)
chr4 (1-189)||(1662980-1663165)
chr4 (1-189)||(15238290-15238475)
chr4 (1-210)||(1895775-1895979)
chr4 (1-210)||(15219517-15219719)
chr4 (3-189)||(26406785-26406971)
chr4 (8-210)||(14239873-14240072)
chr4 (1-97)||(12785711-12785806)
chr4 (3-92)||(26461245-26461332)
chr4 (43-210)||(16244909-16245068)
chr4 (43-94)||(15269018-15269069)
chr4 (43-94)||(15299360-15299411)
chr4 (142-210)||(17087052-17087116)
chr4 (43-97)||(18465086-18465139)
chr4 (43-97)||(20757406-20757459)
chr4 (43-97)||(20763797-20763850)
chr4 (2-89)||(5199790-5199877)
chr4 (2-89)||(19639416-19639504)
chr4 (2-89)||(22727378-22727465)
chr4 (43-97)||(16281253-16281306)
chr4 (2-89)||(18044107-18044195)
chr4 (1-89)||(14675685-14675773)
chr4 (141-210)||(12785602-12785667)
chr4 (2-89)||(13441239-13441326)
chr4 (43-94)||(15395929-15395979)
chr4 (43-94)||(15399854-15399904)
chr4 (43-97)||(17087158-17087211)
chr4 (143-210)||(26461380-26461443)
chr4 (38-92)||(27167942-27167996)
chr4 (10-89)||(14657251-14657330)
chr4 (141-210)||(15269112-15269176)
[»] chr3 (33 HSPs)
chr3 (8-210)||(28165930-28166135)
chr3 (8-210)||(17787796-17787990)
chr3 (8-210)||(19089317-19089511)
chr3 (1-210)||(15363948-15364150)
chr3 (1-210)||(18525835-18526038)
chr3 (1-210)||(23011695-23011897)
chr3 (1-210)||(14141620-14141825)
chr3 (2-193)||(11646885-11647073)
chr3 (2-189)||(19627710-19627896)
chr3 (1-188)||(4654099-4654279)
chr3 (43-97)||(10929771-10929824)
chr3 (43-97)||(15475832-15475885)
chr3 (43-97)||(29942720-29942773)
chr3 (43-97)||(29991874-29991927)
chr3 (2-89)||(4883065-4883152)
chr3 (2-89)||(8278950-8279037)
chr3 (2-89)||(8307760-8307847)
chr3 (2-89)||(22641407-22641494)
chr3 (43-97)||(15371629-15371682)
chr3 (43-97)||(16614797-16614851)
chr3 (43-97)||(16631120-16631174)
chr3 (43-97)||(22052009-22052063)
chr3 (1-89)||(18046823-18046911)
chr3 (1-89)||(18062886-18062974)
chr3 (2-89)||(10600818-10600905)
chr3 (2-89)||(15882137-15882224)
chr3 (143-187)||(19704917-19704961)
chr3 (43-97)||(36131310-36131363)
chr3 (2-89)||(8291524-8291611)
chr3 (2-89)||(15897316-15897403)
chr3 (2-89)||(18003171-18003258)
chr3 (2-89)||(35876321-35876408)
chr3 (2-89)||(35891391-35891478)
[»] chr2 (17 HSPs)
chr2 (1-210)||(10115400-10115607)
chr2 (2-210)||(18085747-18085950)
chr2 (1-210)||(21692945-21693146)
chr2 (1-210)||(21707727-21707928)
chr2 (1-210)||(17260195-17260400)
chr2 (43-94)||(19446190-19446241)
chr2 (43-94)||(19460999-19461050)
chr2 (2-89)||(12651136-12651223)
chr2 (2-89)||(12666057-12666144)
chr2 (2-89)||(28269304-28269391)
chr2 (2-89)||(20831694-20831781)
chr2 (1-97)||(22700173-22700267)
chr2 (43-94)||(19556451-19556501)
chr2 (43-94)||(27388597-27388647)
chr2 (43-94)||(27399658-27399708)
chr2 (2-89)||(34263404-34263491)
chr2 (2-89)||(34306203-34306290)
[»] scaffold0055 (1 HSPs)
scaffold0055 (1-210)||(7290-7491)
[»] scaffold0052 (1 HSPs)
scaffold0052 (1-210)||(77044-77245)
[»] scaffold0021 (2 HSPs)
scaffold0021 (1-210)||(99209-99410)
scaffold0021 (2-210)||(180132-180332)
[»] scaffold0954 (1 HSPs)
scaffold0954 (1-210)||(2811-3013)
[»] scaffold0134 (1 HSPs)
scaffold0134 (1-210)||(23406-23608)
[»] scaffold0031 (1 HSPs)
scaffold0031 (8-210)||(126034-126236)
[»] scaffold0143 (1 HSPs)
scaffold0143 (8-210)||(22763-22964)
[»] scaffold0322 (1 HSPs)
scaffold0322 (8-210)||(17520-17714)
[»] scaffold0260 (2 HSPs)
scaffold0260 (5-92)||(5526-5612)
scaffold0260 (143-189)||(5663-5709)
[»] scaffold0184 (1 HSPs)
scaffold0184 (3-210)||(22665-22865)
[»] scaffold0078 (1 HSPs)
scaffold0078 (3-210)||(49979-50179)
[»] scaffold0609 (2 HSPs)
scaffold0609 (15-97)||(1376-1457)
scaffold0609 (143-210)||(1500-1564)
[»] scaffold0092 (1 HSPs)
scaffold0092 (3-210)||(17455-17656)
[»] scaffold0206 (1 HSPs)
scaffold0206 (3-97)||(12672-12767)
[»] scaffold0211 (1 HSPs)
scaffold0211 (43-97)||(10963-11016)
[»] scaffold0109 (4 HSPs)
scaffold0109 (8-94)||(17177-17262)
scaffold0109 (8-94)||(31421-31506)
scaffold0109 (141-210)||(17069-17133)
scaffold0109 (141-210)||(31313-31377)
[»] scaffold0231 (1 HSPs)
scaffold0231 (2-89)||(26221-26308)
[»] scaffold0001 (1 HSPs)
scaffold0001 (2-89)||(72661-72748)
[»] scaffold0389 (2 HSPs)
scaffold0389 (46-97)||(15236-15286)
scaffold0389 (139-208)||(15323-15387)
[»] scaffold0089 (2 HSPs)
scaffold0089 (2-89)||(11342-11429)
scaffold0089 (2-89)||(25393-25481)
[»] scaffold0186 (1 HSPs)
scaffold0186 (1-89)||(13290-13379)
[»] scaffold0174 (1 HSPs)
scaffold0174 (43-94)||(8497-8547)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 34195985 - 34196192
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||       
T  34195985 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa-aa 34196083  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||||||||||||        ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34196084 aaatttcaagtgatggaatttgcttatttt-aaaaaaagaatatttttctaagtatcgtgttccctaagcatacatctaaagcggtaaatcatcatacaa 34196182  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  34196183 cgtgtgtgcg 34196192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 34194734 - 34194526
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||       
T  34194734 aaaaaaagtctcagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa-at 34194636  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||||||||||||        || |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34194635 ttttttcaagtgatggaatttgcttattttaaaaaaaagagtatttttctaagtatcgcgttccctaagcatacatctaaaccggtaaatcatcatacaa 34194536  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  34194535 cgtgtgtgcg 34194526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 7369486 - 7369279
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnn 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||        
T  7369486 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatta-gaaaaaa 7369388  T
Q  102 nnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaac 201  Q
         ||||||||||||||||||||||||        ||   |||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  7369387 aatttcaagtgatggaatttgcttattttggaaaattgatattttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaatcaacatacaac 7369288  T
Q  202 gtgtgtgcg 210  Q
    |||||||||    
T  7369287 gtgtgtgcg 7369279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 23765352 - 23765151
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnn 101  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||        
T  23765352 aaaaatgtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa--aa 23765255  T
Q  102 nnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaac 201  Q
         ||||||||||||||| ||||||||        | ||||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||||    
T  23765254 attttcaagtgatggaatttacttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaac 23765160  T
Q  202 gtgtgtgcg 210  Q
    |||||||||    
T  23765159 gtgtgtgcg 23765151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 16439470 - 16439676
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||||       
T  16439470 aaaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa-ag 16439567  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||||||||||||        | || |||| |||||||||||||| ||| ||||||||||||||||||||||||| |||||||    
T  16439568 aattttcaagtgatggaatttgcttattttggaaaattg-atgtttttctaagtatcgcgtttcctcagcatacatctaaagcggtaaatcaacatacaa 16439666  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  16439667 cgtgtgtgcg 16439676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 30241552 - 30241753
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||       
T  30241552 aaaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaa--a 30241648  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||||||||||||        | ||||||| |||||| ||||||| ||||||||||||||||||||||||||    |||||||    
T  30241649 aaatttcaagtgatggaatttgcttattttggaaaattg-atatttttctaagtgtcgcgtttcctaagcatacatctaaagcggtaaa----catacaa 30241743  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  30241744 cgtgtgtgcg 30241753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 16037008 - 16036807
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||       
T  16037008 aaaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttgtttggaa--a 16036912  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||||||||||||        | ||||||| |||||||||||||| ||||| ||||||||||||||||||||    |||||||    
T  16036911 aaatttcaagtgatggaatttgcttattttggaaaattg-atatttttctaagtatcgcgtttcctaaacatacatctaaagcggtaaa----catacaa 16036817  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  16036816 cgtgtgtgcg 16036807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 16051735 - 16051534
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||       
T  16051735 aaaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttgtttggaa--a 16051639  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||||||||||||        | ||||||| |||||||||||||| ||||| ||||||||||||||||||||    |||||||    
T  16051638 aaatttcaagtgatggaatttgcttattttggaaaattg-atatttttctaagtatcgcgtttcctaaacatacatctaaagcggtaaa----catacaa 16051544  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  16051543 cgtgtgtgcg 16051534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 16454408 - 16454535
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||||       
T  16454408 aaaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa-ag 16454505  T
Q  101 nnnnnncaagtgatggaatttgcttatttt 130  Q
          ||||||||||||||||||||||||    
T  16454506 aattttcaagtgatggaatttgcttatttt 16454535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 10839241 - 10839442
Alignment:
Q  8 gtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnc 107  Q
    |||||||||||||||| ||||||||||| |||| |||||||||||||||| ||| | ||||||||||| |||||||||||||||| | ||         |    
T  10839241 gtctaagttggaattaaagttcatttgaattttgcttaagaaaataaaggaaaagtgcaatggagttttgactccaaggtttatttgaaa--aaattttc 10839338  T
Q  108 aagtgatggaatttgctta-ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 206  Q
    ||||||||||| || || | ||||        ||||||||| |||||||||||||||||||||||| |||||||  |||||||||| |||||||||||||    
T  10839339 aagtgatggaactttctaattttttgggaaatgaatatttttctaagtatcgcgttccctaagcatgcatctaagacggtaaatcaacatacaacgtgtg 10839438  T
Q  207 tgcg 210  Q
    ||||    
T  10839439 tgcg 10839442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 15854349 - 15854149
Alignment:
Q  3 aaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnn 102  Q
    |||| ||||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||||||| |||||||||||||||| ||||         
T  15854349 aaaatgtctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggagttttgactccaaggtttattcggaa--aaa 15854254  T
Q  103 nnnncaagtgatggaatttgctta-ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaac 201  Q
        |||||||| ||||||||||| ||||          | ||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||||    
T  15854253 ttttcaagtgatagaatttgcttattttttggaaaattgacatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaac 15854158  T
Q  202 gtgtgtgcg 210  Q
    |||||||||    
T  15854157 gtgtgtgcg 15854149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 10852018 - 10851967
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 94  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  10852018 ttaagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 10851967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 15004627 - 15004678
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 94  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  15004627 ttaagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 15004678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 13895182 - 13895232
Alignment:
Q  44 taagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 94  Q
    |||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  13895182 taagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 13895232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 2150260 - 2150173
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  2150260 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 2150173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 2165471 - 2165384
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  2165471 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 2165384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 4055538 - 4055413
Alignment:
Q  3 aaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaaggg-aaaattcaatggagtttcgactccaaggtttattaggaannnn 101  Q
    |||| |||||||| | | |||||||||||||||| |||  |||||||||||||||| |||| |||||||||||| |||||||| |||| || ||||        
T  4055538 aaaatgtctaagtagaagttagagttcatttgag-tttgattaagaaaataaagggaaaaaatcaatggagttttgactccaaagtttgtttggaa--aa 4055442  T
Q  102 nnnnncaagtgatggaatttgcttatttt 130  Q
         ||||||||||||||||||||||||    
T  4055441 attttcaagtgatggaatttgcttatttt 4055413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 10921320 - 10921407
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  10921320 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 10921407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 16498465 - 16498552
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  16498465 aaaaaagtctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 16498552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 16507772 - 16507859
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  16507772 aaaaaagtctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 16507859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 16522876 - 16522963
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  16522876 aaaaaagtctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 16522963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 13736013 - 13736102
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat--tcaatggagtttcgactccaaggttt 89  Q
    ||||||||||||||| ||||||||  ||||||||  ||| | ||||||||||||||| ||||   |||||||||||| |||||||||||||    
T  13736013 aaaaaaggtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaaaatcaatggagttttgactccaaggttt 13736102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 11414240 - 11414330
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggttt 89  Q
    |||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| ||||   ||||||||||||| |||||||||||||    
T  11414240 aaaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaagtttcaatggagttttgactccaaggttt 11414330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 11429223 - 11429313
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggttt 89  Q
    |||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| ||||   ||||||||||||| |||||||||||||    
T  11429223 aaaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaagtttcaatggagttttgactccaaggttt 11429313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 36879004 - 36879092
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaaggga-aaattcaatggagtttcgactccaaggttt 89  Q
    ||||||||||||||| ||||||||  |||||| |  ||| | ||||||||||||||| | ||| |||||||||||| |||||||||||||    
T  36879004 aaaaaaggtctaagtaggaattaggattcattcggatttgt-ttaagaaaataaaggaagaaaatcaatggagttttgactccaaggttt 36879092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 4186554 - 4186467
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaa-attcaatggagtttcgactccaaggttt 89  Q
    ||||| || ||||| ||||||||  |||||||| | |||  ||||||||||||||| ||| |||||||||||||| |||||||||||||    
T  4186554 aaaaaagtttaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaagattcaatggagttttgactccaaggttt 4186467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 18627236 - 18627147
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  |||||||| | |||  ||||||||||||||| ||||   ||||||||||||| |||||||||||||    
T  18627236 aaaaaagtctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaaaattcaatggagttttgactccaaggttt 18627147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 48217395 - 48217306
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  |||||||| | |||  ||||||||||||||| ||||   ||||||||||||| |||||||||||||    
T  48217395 aaaaaagtctaagtaggaattaggattcatttg-gatttgattaagaaaataaaggaaaaaaaattcaatggagttttgactccaaggttt 48217306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 2969136 - 2969048
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    |||||| |||||||| || |||||  ||||||||  ||| | ||||||||||||| | |||| ||||||||||||| |||||||||||||    
T  2969136 aaaaaaagtctaagtagggattaggattcatttggatttgt-ttaagaaaataaaagaaaaaattcaatggagttttgactccaaggttt 2969048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 10851926 - 10851862
Alignment:
Q  141 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    ||||||| |||||||| ||||| ||||||||| ||||||| ||||||||    |||||||||||||||||    
T  10851926 atatttttctaagtattgcgtttcctaagcatgcatctaa-gcggtaaa----catacaacgtgtgtgcg 10851862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 13895274 - 13895338
Alignment:
Q  141 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    ||||||| |||||||| ||||| ||||||||| ||||||| ||||||||    |||||||||||||||||    
T  13895274 atatttttctaagtattgcgtttcctaagcatgcatctaa-gcggtaaa----catacaacgtgtgtgcg 13895338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 15004721 - 15004785
Alignment:
Q  141 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    ||||||| |||||||| ||||| ||||||||| ||||||| ||||||||    |||||||||||||||||    
T  15004721 atatttttctaagtattgcgtttcctaagcatgcatctaa-gcggtaaa----catacaacgtgtgtgcg 15004785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 28503701 - 28503910
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattagg-aann 99  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||      
T  28503701 aaaaaaagtctaagttggaattagagttgatttgagtttttcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaaaaa 28503800  T
Q  100 nnnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcataca 199  Q
           ||||||||||||||||||||||||        ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28503801 aaaatttcaagtgatggaatttgcttatttt-aaaaaaagaatatttttctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcataca 28503899  T
Q  200 acgtgtgtgcg 210  Q
    |||||||||||    
T  28503900 acgtgtgtgcg 28503910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 15018240 - 15018187
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  15018240 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 15018187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 21337108 - 21337198
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggttt 89  Q
    |||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||||||||   ||||||||||||| |||||||||||||    
T  21337108 aaaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaagggaaaaagtttcaatggagttttgactccaaggttt 21337198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 21377069 - 21377159
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggttt 89  Q
    |||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||||||||   ||||||||||||| |||||||||||||    
T  21377069 aaaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaagggaaaaagtttcaatggagttttgactccaaggttt 21377159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 11342453 - 11342504
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 94  Q
    ||||||||||||||||||||| |||||| || | ||||||||||||||||||    
T  11342453 ttaagaaaataaagggaaaatacaatggggtgttgactccaaggtttattag 11342504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 15324684 - 15324594
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat---tcaatggagtttcgactccaaggttt 89  Q
    |||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||||||||    |||||||||||| |||||||||||||    
T  15324684 aaaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaagggaaaaagtctcaatggagttttgactccaaggttt 15324594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 15505053 - 15504963
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat---tcaatggagtttcgactccaaggttt 89  Q
    |||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||||||||    |||||||||||| |||||||||||||    
T  15505053 aaaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaagggaaaaagtctcaatggagttttgactccaaggttt 15504963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 28263200 - 28263110
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggttt 89  Q
    |||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| ||||   ||||||||||||| |||||||||||||    
T  28263200 aaaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaagtttcaatggagttttgactccaaggttt 28263110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 21965695 - 21965645
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 94  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  21965695 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 21965645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 22070706 - 22070756
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 94  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  22070706 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 22070756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 15018150 - 15018084
Alignment:
Q  139 gaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    |||||||||| ||||||||||||  ||||| |||||||||||| |||||||    |||||||||||||||||    
T  15018150 gaatattttc-taagtatcgcgtctcctaaacatacatctaaaacggtaaa----catacaacgtgtgtgcg 15018084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 5516282 - 5516369
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||| |||| | |||  |||||||| |||||| |||| ||||||||||||| |||||||||||||    
T  5516282 aaaaaagtctaagtaggaattaggattcgtttg-gatttgattaagaaagtaaaggaaaaaattcaatggagttttgactccaaggttt 5516369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 11342547 - 11342611
Alignment:
Q  141 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    ||||||| |||||||| ||||| ||||||||| ||||||| ||||||||    |||||||||||||||||    
T  11342547 atatttttctaagtattgcgtttcctaagcatgcatctaa-gcggtaaa----catacaacgtgtgtgcg 11342611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 28898239 - 28898446
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||       
T  28898239 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaaggg-aaattcaatggagtcttgactccaaggtttattaggaa-aa 28898336  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          |||||||||||||||||||||||         ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28898337 aaatttcaagtgatggaatttgcttatttaaaaaaaaagaatatttttctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 28898436  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  28898437 cgtgtgtgcg 28898446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 28934634 - 28934841
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||       
T  28934634 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaaggg-aaattcaatggagtcttgactccaaggtttattaggaa-aa 28934731  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          |||||||||||||||||||||||         ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28934732 aaatttcaagtgatggaatttgcttatttaaaaaaaaagaatatttttctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 28934831  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  28934832 cgtgtgtgcg 28934841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 30465592 - 30465794
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||       
T  30465592 aaaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaa-at 30465689  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||||||||||||        | ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||    
T  30465690 ttttttcaagtgatggaatttgcttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaa 30465784  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  30465785 cgtgtgtgcg 30465794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 22899187 - 22898991
Alignment:
Q  7 ggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnn 106  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||||             
T  22899187 ggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa-aaaaattt 22899090  T
Q  107 caagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 206  Q
    ||||||||||||||| ||||||||        | ||||||| |||||||||| ||| ||||||||||||||||||||||||||    |||||||||||||    
T  22899089 caagtgatggaatttacttattttggaaaattg-atatttttctaagtatcgtgtttcctaagcatacatctaaagcggtaaa----catacaacgtgtg 22898995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 24612118 - 24612323
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||       
T  24612118 aaaaaaggtctaagttggaattagagttcatttgag-tttgattaagaaaataaagggaaatttcaatggagttttgactccaaggtctatttggaa-aa 24612215  T
Q  101 nnnnnncaagtgatggaatttgctta--ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatac 198  Q
          ||||||||||||||| | ||  ||||          ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||    
T  24612216 aaatttcaagtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catac 24612311  T
Q  199 aacgtgtgtgcg 210  Q
    ||||||||||||    
T  24612312 aacgtgtgtgcg 24612323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 24671744 - 24671949
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||       
T  24671744 aaaaaaggtctaagttggaattagagttcatttgag-tttgattaagaaaataaagggaaatttcaatggagttttgactccaaggtctatttggaa-aa 24671841  T
Q  101 nnnnnncaagtgatggaatttgctta--ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatac 198  Q
          ||||||||||||||| | ||  ||||          ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||    
T  24671842 aaatttcaagtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catac 24671937  T
Q  199 aacgtgtgtgcg 210  Q
    ||||||||||||    
T  24671938 aacgtgtgtgcg 24671949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 24708520 - 24708725
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||       
T  24708520 aaaaaaggtctaagttggaattagagttcatttgag-tttgattaagaaaataaagggaaatttcaatggagttttgactccaaggtctatttggaa-aa 24708617  T
Q  101 nnnnnncaagtgatggaatttgctta--ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatac 198  Q
          ||||||||||||||| | ||  ||||          ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||    
T  24708618 aaatttcaagtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catac 24708713  T
Q  199 aacgtgtgtgcg 210  Q
    ||||||||||||    
T  24708714 aacgtgtgtgcg 24708725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 24741514 - 24741719
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||       
T  24741514 aaaaaaggtctaagttggaattagagttcatttgag-tttgattaagaaaataaagggaaatttcaatggagttttgactccaaggtctatttggaa-aa 24741611  T
Q  101 nnnnnncaagtgatggaatttgctta--ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatac 198  Q
          ||||||||||||||| | ||  ||||          ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||    
T  24741612 aaatttcaagtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catac 24741707  T
Q  199 aacgtgtgtgcg 210  Q
    ||||||||||||    
T  24741708 aacgtgtgtgcg 24741719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 24754283 - 24754488
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||       
T  24754283 aaaaaaggtctaagttggaattagagttcatttgag-tttgattaagaaaataaagggaaatttcaatggagttttgactccaaggtctatttggaa-aa 24754380  T
Q  101 nnnnnncaagtgatggaatttgctta--ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatac 198  Q
          ||||||||||||||| | ||  ||||          ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||    
T  24754381 aaatttcaagtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catac 24754476  T
Q  199 aacgtgtgtgcg 210  Q
    ||||||||||||    
T  24754477 aacgtgtgtgcg 24754488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 22268722 - 22268924
Alignment:
Q  3 aaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnn 102  Q
    |||| ||||||||||||||||||||||||||||| |||  |||||||||||||  ||| || ||||||||||| |||||||||||||||| ||||         
T  22268722 aaaatgtctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaagatgcaatggagttttgactccaaggtttatttggaa--aaa 22268817  T
Q  103 nnnncaagtgatggaatttgcttattttnnnnnnnnga---atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcataca 199  Q
        ||||||||||||||||||||||||         |   | ||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||    
T  22268818 ttttcaagtgatggaatttgcttattttttttggaaaattgacatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----cataca 22268913  T
Q  200 acgtgtgtgcg 210  Q
    |||||||||||    
T  22268914 acgtgtgtgcg 22268924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 20579985 - 20580112
Alignment:
Q  3 aaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa---ttcaatggagtttcgactccaaggtttattaggaann 99  Q
    |||| |||||||||||||||||| |||||||| | |||  ||||||||||||||| ||||   ||||||||||||| |||||||||||||||| ||||      
T  20579985 aaaaagtctaagttggaattagaattcatttg-gatttgattaagaaaataaaggaaaaaaaattcaatggagttttgactccaaggtttatttggaa-- 20580081  T
Q  100 nnnnnnncaagtgatggaatttgcttatttt 130  Q
           ||||||||||||||||||||||||    
T  20580082 aaaatttcaagtgatggaatttgcttatttt 20580112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 25195656 - 25195591
Alignment:
Q  141 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||     |||||||||||||||||    
T  25195656 atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaag----catacaacgtgtgtgcg 25195591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 25211018 - 25210953
Alignment:
Q  141 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||     |||||||||||||||||    
T  25211018 atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaag----catacaacgtgtgtgcg 25210953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 25275170 - 25275105
Alignment:
Q  141 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||     |||||||||||||||||    
T  25275170 atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaag----catacaacgtgtgtgcg 25275105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 19863750 - 19863803
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  19863750 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 19863803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 21501394 - 21501341
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  21501394 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 21501341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 37294690 - 37294743
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||    
T  37294690 ttaagaaaataaagggaaa-tacaatggagttttgactccaaggtttattaggaa 37294743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 20193517 - 20193605
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||||||||||||| ||||||||   |||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  20193517 aaaaaaggtctaagtaggaattaggagtcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 20193605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 24947802 - 24947715
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  24947802 aaaaaagtctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 24947715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 24980667 - 24980580
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  24980667 aaaaaagtctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 24980580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 7816339 - 7816250
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa--ttcaatggagtttcgactccaaggttt 89  Q
    |||||| |||||||| ||||||||  |||||||| | |||  ||||||||||||||| ||||  ||||||||||||| |||||||||||||    
T  7816339 aaaaaaagtctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaaattcaatggagttttgactccaaggttt 7816250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 27285673 - 27285719
Alignment:
Q  141 atattttcctaagtatcgcgttccctaagcatacatctaaagcggta 187  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  27285673 atatttttctaagtgtcgcgtttcctaagcatacatctaaagcggta 27285719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 23887908 - 23887824
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaagg 86  Q
    ||||| |||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| ||||||||||    
T  23887908 aaaaaagtctaagtaggaattaggattcatttg-gatttgattaagaaaataaaggaaaaaattcaatggagttttgactccaagg 23887824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 24692631 - 24692718
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| || |||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  24692631 aaaaaagtctaagtagggattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 24692718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 3944137 - 3944051
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| || |||||  ||||||||  ||| | ||||||||||||||  |||| |||||||||||| |||||||||||||    
T  3944137 aaaaaagtctaagtagggattaggattcatttggatttgt-ttaagaaaataaagaaaaaagtcaatggagttttgactccaaggttt 3944051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 23902551 - 23902467
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaagg 86  Q
    ||||| |||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| |||||||||||||  |||||||||    
T  23902551 aaaaaagtctaagtaggaattaggattcatttg-gatttgattaagaaaataaaggaaaaaattcaatggagttttnactccaagg 23902467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 25195754 - 25195700
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||  |||| |||| ||||||||||||| |||||||||||||||| ||||    
T  25195754 ttaagaaagcaaagagaaagttcaatggagttttgactccaaggtttatttggaa 25195700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 25211116 - 25211062
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||  |||| |||| ||||||||||||| |||||||||||||||| ||||    
T  25211116 ttaagaaagcaaagagaaagttcaatggagttttgactccaaggtttatttggaa 25211062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 25275268 - 25275214
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||  |||| |||| ||||||||||||| |||||||||||||||| ||||    
T  25275268 ttaagaaagcaaagagaaagttcaatggagttttgactccaaggtttatttggaa 25275214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 37750772 - 37750718
Alignment:
Q  38 ttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 92  Q
    |||||||||||||||||| |||||  |||| ||||||| |||||||| |||||||    
T  37750772 ttttcttaagaaaataaaaggaaacatcaaaggagttttgactccaaagtttatt 37750718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 37766017 - 37765963
Alignment:
Q  38 ttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 92  Q
    |||||||||||||||||| |||||  |||| ||||||| |||||||| |||||||    
T  37766017 ttttcttaagaaaataaaaggaaacatcaaaggagttttgactccaaagtttatt 37765963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 11545927 - 11545867
Alignment:
Q  144 ttttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgc 209  Q
    |||| ||||||| |||||| |||||||||||||||||| |||||||    ||||||||||||||||    
T  11545927 tttttctaagtagcgcgtttcctaagcatacatctaaa-cggtaaa----catacaacgtgtgtgc 11545867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 11559986 - 11559926
Alignment:
Q  144 ttttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgc 209  Q
    |||| ||||||| |||||| |||||||||||||||||| |||||||    ||||||||||||||||    
T  11559986 tttttctaagtagcgcgtttcctaagcatacatctaaa-cggtaaa----catacaacgtgtgtgc 11559926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 21501295 - 21501238
Alignment:
Q  149 ctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    |||||||||||||  ||||| |||||||||||| |||||||    |||||||||||||||||    
T  21501295 ctaagtatcgcgtctcctaaacatacatctaaaacggtaaa----catacaacgtgtgtgcg 21501238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 22347825 - 22347738
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||   |||||||  ||| | ||||||||||||| | |||| ||||||||||||| |||||||||||||    
T  22347825 aaaaaagtctaagtaggaattaggagtcatttggatttgt-ttaagaaaataaaagaaaaaattcaatggagttttgactccaaggttt 22347738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 27285577 - 27285629
Alignment:
Q  46 agaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||| ||||| ||||||||||||| ||||||| |||||||| ||||    
T  27285577 agaaaataaagagaaaaattcaatggagttttgactccatggtttatttggaa 27285629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 16663077 - 16663284
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||       
T  16663077 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaaggg-aaattcaatggagtcttgactccaaggtttattaggaa-aa 16663174  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          |||||||||||||||||||||||         ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16663175 aaatttcaagtgatggaatttgcttatttaaaaaaaaagaatatttttctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 16663274  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  16663275 cgtgtgtgcg 16663284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 31447464 - 31447673
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttt-tcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaann 99  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||      
T  31447464 aaaaaaggtctaagttggaattagagttcatttgagttttttcttaagaaaataaagggaaaattcaatggagttttgactccaaagtttattaggaa-a 31447562  T
Q  100 nnnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcataca 199  Q
           ||||||||||||||||||||||||        ||   |||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  31447563 aaattttcaagtgatggaatttgcttattttggaaaattgatattttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaatcaacataca 31447662  T
Q  200 acgtgtgtgcg 210  Q
    |||||||||||    
T  31447663 acgtgtgtgcg 31447673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 20362123 - 20362327
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||       
T  20362123 aaaaagggtctaagttggaattaaagttcatttgagtttttcttaagaaaataaagggaaaattcaatagagttttgactccaaggtttattaggaa--a 20362220  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaata-ttttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcataca 199  Q
          ||||||||||||||||||| ||||        ||||| |||| |||||| | | ||||||||| ||||||||||||||||||||    ||||||    
T  20362221 aattttcaagtgatggaatttgcttgtttttggaaaatgaatattttttctaagtttggtgttccctaaacatacatctaaagcggtaaa----cataca 20362316  T
Q  200 acgtgtgtgcg 210  Q
    |||||||||||    
T  20362317 acgtgtgtgcg 20362327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 20548788 - 20548584
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||       
T  20548788 aaaaagggtctaagttggaattaaagttcatttgagtttttcttaagaaaataaagggaaaattcaatagagttttgactccaaggtttattaggaa--a 20548691  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaata-ttttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcataca 199  Q
          ||||||||||||||||||| ||||        ||||| |||| |||||| | | ||||||||| ||||||||||||||||||||    ||||||    
T  20548690 aattttcaagtgatggaatttgcttgtttttggaaaatgaatattttttctaagtttggtgttccctaaacatacatctaaagcggtaaa----cataca 20548595  T
Q  200 acgtgtgtgcg 210  Q
    |||||||||||    
T  20548594 acgtgtgtgcg 20548584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 16197527 - 16197726
Alignment:
Q  3 aaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnn 102  Q
    |||| ||||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||||||| |||||||||||||||| ||||         
T  16197527 aaaatgtctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggagttttgactccaaggtttatttggaa--aaa 16197622  T
Q  103 nnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacg 202  Q
        ||||||||||||||||||||||||          ||||||| |||||||||||||| |||||||||||||||||||||||| |    |||||||||    
T  16197623 atttcaagtgatggaatttgcttatttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtata----catacaacg 16197718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 16405963 - 16405779
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnn 101  Q
    ||||| ||||||||||||||||||||||||||| | |||  ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||        
T  16405963 aaaaaagtctaagttggaattagagttcatttg-gatttgattaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaa--aa 16405867  T
Q  102 nnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 189  Q
         ||||||||||||||||||||||||            ||||| ||||||||||| || ||||| ||||||||||||||||||||    
T  16405866 attttcaagtgatggaatttgcttatttttggaaaattggcatttttctaagtatcgcatttcctaaacatacatctaaagcggtaaa 16405779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 16212536 - 16212735
Alignment:
Q  3 aaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnn 102  Q
    |||| ||||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||||||| |||||||||||||||| ||||         
T  16212536 aaaatgtctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggagttttgactccaaggtttatttggaa--aaa 16212631  T
Q  103 nnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacg 202  Q
        ||||||||||||||||||||||||          ||||||| ||||||||||| || |||||||||||||||||||||||| |    |||||||||    
T  16212632 atttcaagtgatggaatttgcttatttttggaaaattgatatttttctaagtatcgcatttcctaagcatacatctaaagcggtata----catacaacg 16212727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 20329659 - 20329842
Alignment:
Q  5 aaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnn 104  Q
    ||||||||||||||||||||||||||||||| |||   ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||           
T  20329659 aaggtctaagttggaattagagttcatttgaatttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatttggaa--aaaat 20329755  T
Q  105 nncaagtgatggaatttgcttattttnnnnnnnngaat----attttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 189  Q
      ||||||||||||||||||||||||         |||    ||||| ||||||||||| || ||||||||||||||||||||||||||    
T  20329756 ttcaagtgatggaatttgcttatttttttggaa--aattggcatttttctaagtatcgcatttcctaagcatacatctaaagcggtaaa 20329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 20343203 - 20343289
Alignment:
Q  5 aaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 92  Q
    ||||||||||||||||||||||||||||||| |||   ||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  20343203 aaggtctaagttggaattagagttcatttgaatttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatt 20343289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 3 - 189
Target Start/End: Complemental strand, 21730680 - 21730497
Alignment:
Q  3 aaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnn 102  Q
    |||| ||||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||||||| |||||||||||||||| ||||         
T  21730680 aaaatgtctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggagttttgactccaaggtttattcggaa--aaa 21730585  T
Q  103 nnnncaagtgatggaatttgctta-ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 189  Q
        |||||||||||||||||||| ||||          | ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  21730584 atttcaagtgatggaatttgcttattttttggaaaattgacatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa 21730497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 21731711 - 21731625
Alignment:
Q  3 aaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttat 91  Q
    |||| ||||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||||||| |||||||||||||||    
T  21731711 aaaatgtctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggagttttgactccaaggtttat 21731625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 210
Target Start/End: Original strand, 9192799 - 9192966
Alignment:
Q  41 tcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnncaagtgatggaatttgcttattttnnnnnnnnga 140  Q
    ||||||||||||||||||||||| ||||||||||| | ||||||||||||||  |||         ||||||||||||||||| || |||        ||    
T  9192799 tcttaagaaaataaagggaaaatgcaatggagttttggctccaaggtttatttagaa--aaattttcaagtgatggaatttgc-tagttttggaaaatga 9192895  T
Q  141 ata-ttttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    ||| |||| |||||||||||||||||||| ||| |||||||   ||||||||| |||||| ||||||||||    
T  9192896 atattttttctaagtatcgcgttccctaaacatgcatctaagatggtaaatcaacatacaccgtgtgtgcg 9192966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 15816205 - 15816300
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    |||||| |||||||| | |||||   ||||||  ||||||  ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  15816205 aaaaaatgtctaagtagaaattaagattcattgaagttttgattaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 15816300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 16230842 - 16230789
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  16230842 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 16230789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 18293800 - 18293713
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  18293800 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 18293713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 21481774 - 21481687
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  21481774 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 21481687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 21886833 - 21886920
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  21886833 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 21886920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 26798319 - 26798232
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  26798319 aaaaaagtctaagtaggaattaggattcatttg-gatttgattaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 26798232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 5137973 - 5137884
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa--ttcaatggagtttcgactccaaggttt 89  Q
    |||||| |||||||| ||||||||  |||||||| | |||  ||||||||||||||| ||||  ||||||||||||| |||||||||||||    
T  5137973 aaaaaaagtctaagtaggaattaggattcatttg-gatttgattaagaaaataaaggaaaaaaattcaatggagttttgactccaaggttt 5137884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 20343340 - 20343386
Alignment:
Q  143 attttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 189  Q
    ||||| ||||||||||| || ||||||||||||||||||||||||||    
T  20343340 atttttctaagtatcgcatttcctaagcatacatctaaagcggtaaa 20343386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 21506000 - 21505913
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaa-attcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| | | |||||||||||||| |||||||||||||    
T  21506000 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaatatattcaatggagttttgactccaaggttt 21505913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 15434367 - 15434317
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 94  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  15434367 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 15434317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 4147267 - 4147355
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa--ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  || ||||| | |||  ||||||||||||||| ||||  ||||||||||||| |||||||||||||    
T  4147267 aaaaaagtctaagtaggaattaggattgatttg-gatttggttaagaaaataaaggaaaaaaattcaatggagttttgactccaaggttt 4147355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 16230752 - 16230686
Alignment:
Q  139 gaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    |||||||||| ||||||||||||  ||||| |||||||||||| |||||||    |||||||||||||||||    
T  16230752 gaatattttc-taagtatcgcgtctcctaaacatacatctaaaacggtaaa----catacaacgtgtgtgcg 16230686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 20456645 - 20456589
Alignment:
Q  149 ctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    |||||||||||||| ||||| ||||||||| ||||||||||    |||||||||||||||||    
T  20456645 ctaagtatcgcgtttcctaaacatacatct-aagcggtaaa----catacaacgtgtgtgcg 20456589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 7306 - 7107
Alignment:
Q  8 gtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnc 107  Q
    |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||         |    
T  7306 gtctaagttggaattaaagttcatttgaattttgcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa--aaattttc 7209  T
Q  108 aagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 207  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7208 aagtgatggaatttgcttatttt-aaaaaaagaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 7110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 12963693 - 12963901
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattagg--aan 98  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |  ||     
T  12963693 aaaaaaagtctaagttggaattagagttcatttgagtttttcttaagaaaatgaagggaaaattcaatggagtttcgactccaagctttattatgaaaaa 12963792  T
Q  99 nnnnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatac 198  Q
            |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12963793 aaataattcaagtgatggaatttgcttattt---aaaaaagaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatac 12963889  T
Q  199 aacgtgtgtgcg 210  Q
    ||||||||||||    
T  12963890 aacgtgtgtgcg 12963901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 14854842 - 14854637
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||       
T  14854842 aaaaaaagtctaagttggaattagagttcatttgagttttgcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa--a 14854745  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||||| || |||        | || |||| |||||||||||||||||||||||| |||||||  |||||||||| |||||||    
T  14854744 aaatttcaagtgatggaatttgc-tagtttttgaaaatgtat-tttttctaagtatcgcgttccctaagcatgcatctaagacggtaaatcaacatacaa 14854647  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  14854646 cgtgtgtgcg 14854637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 28197034 - 28197240
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||| |||||| || |||||||||||||||||||||       
T  28197034 aaaaaaggtctacgttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattctatggagctttgactccaaggtttattaggaa-at 28197131  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||||||||||||        | ||||||| ||||||||||||||||||||||||||||||||  | |||||||| |||||||    
T  28197132 ttttttcaagtgatggaatttgcttattttggaaaattg-atatttttctaagtatcgcgttccctaagcatacatctaagacagtaaatcaacatacaa 28197230  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  28197231 cgtgtgtgcg 28197240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 4112550 - 4112728
Alignment:
Q  8 gtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnc 107  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||         |    
T  4112550 gtctaagttggaattaaagttcatttgaattttgcttaagaaaataaagggaaaattcaatagagttttgactccaaggtttattaggaa--aaattttc 4112647  T
Q  108 aagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 189  Q
    |||||||||||||||||  ||||        | ||||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  4112648 aagtgatggaatttgctagttttggaaaattg-atatttttctaagtatcgcgtttcctaaacatacatctaaagcggtaaa 4112728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 25179738 - 25179533
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||| ||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||       
T  25179738 aaaaaaggtctaagttgggattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaa-aa 25179641  T
Q  101 nnnnnncaagtgatggaatttgctta--ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatac 198  Q
          ||||||||||||||| | ||  ||||          ||||||| |||||||||||||| ||||| ||||||||||||||||||||    |||||    
T  25179640 aaatttcaagtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgtttcctaaacatacatctaaagcggtaaa----catac 25179545  T
Q  199 aacgtgtgtgcg 210  Q
    ||||||||||||    
T  25179544 aacgtgtgtgcg 25179533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 17028998 - 17029192
Alignment:
Q  8 gtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnc 107  Q
    |||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||         |    
T  17028998 gtctaagttggatttaacattcatttgagtttttcttaagaaaataaagggaaaattcaatggagttttgact-caaggtttattaggaa-ttttttttc 17029095  T
Q  108 aagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 207  Q
    |||||||||||||||||||||||        |  |||||| |||||||||| ||||||||||||| |||||||  |||||||    ||||||||||||||    
T  17029096 aagtgatggaatttgcttattttttgaaaatg--tatttttctaagtatcgtgttccctaagcatgcatctaagacggtaaa----catacaacgtgtgt 17029189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 12048060 - 12048144
Alignment:
Q  8 gtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 92  Q
    |||||||||||||||| ||||||||| | |||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  12048060 gtctaagttggaattaaagttcatttaaattttgcttaagaaaataaagggaaaatgcaatggagttttgactccaaggtttatt 12048144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 189
Target Start/End: Complemental strand, 24376958 - 24376771
Alignment:
Q  3 aaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnn 102  Q
    |||| |||||||| | | |||||||||||| | |||||  |||||||||||||| |||||||||||||||||| |||||||||||||||| | ||         
T  24376958 aaaatgtctaagtagaagttagagttcattggggttttgattaagaaaataaagagaaaattcaatggagttttgactccaaggtttatttgaaaaaatt 24376859  T
Q  103 nnnncaagtgatggaatttgcttattttnnnnnnnnga---atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 189  Q
         |||||||||||||||||| ||||         |   ||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  24376858 tta--aagtgatggaatttgcttgttttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa 24376771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 20134756 - 20134664
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattagg 95  Q
    ||||| |||||||| ||||||| | ||||||  ||||||  ||||||||||||||| | ||| ||||||||||| |||||||||||||||||||    
T  20134756 aaaaatgtctaagtaggaattaaaattcattgaagttttggttaagaaaataaagg-agaatacaatggagttttgactccaaggtttattagg 20134664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 22198113 - 22198205
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattagg 95  Q
    ||||| |||||||| ||||||| | ||||||  ||||||  ||||||||||||||| | ||| ||||||||||| |||||||||||||||||||    
T  22198113 aaaaatgtctaagtaggaattaaaattcattgaagttttggttaagaaaataaagg-agaatacaatggagttttgactccaaggtttattagg 22198205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 924463 - 924410
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  924463 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 924410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 8765584 - 8765531
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  8765584 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 8765531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 12048198 - 12048256
Alignment:
Q  152 agtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    ||||||||||||||||| ||| |||||||  |||||||||| |||||||||||||||||    
T  12048198 agtatcgcgttccctaaacatgcatctaagacggtaaatcaacatacaacgtgtgtgcg 12048256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 20424705 - 20424652
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  20424705 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 20424652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 17086728 - 17086790
Alignment:
Q  144 ttttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    ||||| ||||||||||||| ||||| ||||||||||||||||||||    |||||||||||||||||    
T  17086728 ttttcttaagtatcgcgtttcctaaacatacatctaaagcggtaaa----catacaacgtgtgtgcg 17086790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 30720731 - 30720793
Alignment:
Q  141 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 207  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||||    ||||||||||||||    
T  30720731 atatttttctaagtatcgcgtttcctaagcatacatctaaggcggtaaa----catacaacgtgtgt 30720793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 3043770 - 3043683
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  3043770 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 3043683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 24295116 - 24295204
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaaggga-aaattcaatggagtttcgactccaaggttt 89  Q
    ||||||||||||||| | ||||||  ||||||||  ||| | ||||||||||||| | | |||||||||||||||| |||||||||||||    
T  24295116 aaaaaaggtctaagtagaaattaggattcatttggatttgt-ttaagaaaataaaagaagaaattcaatggagttttgactccaaggttt 24295204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 24309134 - 24309222
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaaggga-aaattcaatggagtttcgactccaaggttt 89  Q
    ||||||||||||||| | ||||||  ||||||||  ||| | ||||||||||||| | | |||||||||||||||| |||||||||||||    
T  24309134 aaaaaaggtctaagtagaaattaggattcatttggatttgt-ttaagaaaataaaagaagaaattcaatggagttttgactccaaggttt 24309222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 12621648 - 12621561
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| || |||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  12621648 aaaaaagtctaagtagggattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 12621561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 924373 - 924307
Alignment:
Q  139 gaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    |||||||||| ||||||||||||  ||||| |||||||||||| |||||||    |||||||||||||||||    
T  924373 gaatattttc-taagtatcgcgtctcctaaacatacatctaaaacggtaaa----catacaacgtgtgtgcg 924307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 22923653 - 22923741
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat--tcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| ||||   |||||||||||| |||||||||||||    
T  22923653 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaaaatcaatggagttttgactccaaggttt 22923741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 22939365 - 22939453
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat--tcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| ||||   |||||||||||| |||||||||||||    
T  22939365 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaaaatcaatggagttttgactccaaggttt 22939453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 23861810 - 23861898
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat--tcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| ||||   |||||||||||| |||||||||||||    
T  23861810 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaaaatcaatggagttttgactccaaggttt 23861898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 17086630 - 17086678
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 92  Q
    ||||||||||||| | ||||| ||||||||||| ||||||||||||||||    
T  17086630 ttaagaaaataaaag-aaaatacaatggagttttgactccaaggtttatt 17086678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 15401877 - 15401964
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||   |||||||  ||| | ||||||||||||| | |||| ||||||||||||| |||||||||||||    
T  15401877 aaaaaagtctaagtaggaattaggagtcatttggatttgt-ttaagaaaataaaagaaaaaattcaatggagttttgactccaaggttt 15401964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 15413664 - 15413751
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||   |||||||  ||| | ||||||||||||| | |||| ||||||||||||| |||||||||||||    
T  15413664 aaaaaagtctaagtaggaattaggagtcatttggatttgt-ttaagaaaataaaagaaaaaattcaatggagttttgactccaaggttt 15413751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 15429257 - 15429344
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||   |||||||  ||| | ||||||||||||| | |||| ||||||||||||| |||||||||||||    
T  15429257 aaaaaagtctaagtaggaattaggagtcatttggatttgt-ttaagaaaataaaagaaaaaattcaatggagttttgactccaaggttt 15429344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 19900405 - 19900492
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||| |||| | |||  |||||||| |||||| |||| ||||||||||||| |||||||||||||    
T  19900405 aaaaaagtctaagtaggaattaggattcgtttg-gatttgattaagaaagtaaaggaaaaaattcaatggagttttgactccaaggttt 19900492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 20156321 - 20156257
Alignment:
Q  141 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    ||||||| ||||||| |||||| ||||| ||||||||| ||||||||||    |||||||||||||||||    
T  20156321 atatttttctaagtagcgcgtttcctaaacatacatct-aagcggtaaa----catacaacgtgtgtgcg 20156257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 22176511 - 22176575
Alignment:
Q  141 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    ||||||| ||||||| |||||| ||||| ||||||||| ||||||||||    |||||||||||||||||    
T  22176511 atatttttctaagtagcgcgtttcctaaacatacatct-aagcggtaaa----catacaacgtgtgtgcg 22176575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 17241902 - 17241694
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||       
T  17241902 aaaaaatgtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa-aa 17241804  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||| ||||||||        ||   |||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  17241803 aattttcaagtgatggaatttccttattttgaaaaattgatattttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaatcaacatacaa 17241704  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  17241703 cgtgtgtgcg 17241694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 15387461 - 15387264
Alignment:
Q  8 gtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnc 107  Q
    |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||         |    
T  15387461 gtctaagttggaattaaagttcatttgaattttgcttaagaaaataaagggaaaatgcaatggagttttgactccaaggtttattaggaaaaaaattt-c 15387363  T
Q  108 aagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 207  Q
    |||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15387362 aagtgatggaatttgcttatt----aaaaaagaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 15387267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 17095229 - 17095017
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt----agga 96  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||    || |    
T  17095229 aaaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaagaa 17095131  T
Q  97 annnnnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcat 196  Q
    |         ||||||||||||||| | ||||||          ||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||    
T  17095130 aaaaaaaattcaagtgatggaatttacctatttttagaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaatcaacat 17095031  T
Q  197 acaacgtgtgtgcg 210  Q
    ||||||||||||||    
T  17095030 acaacgtgtgtgcg 17095017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 1663165 - 1662980
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||||||   |||||||||||||  |||||||||||||||||| |||||||||||||||| ||||       
T  1663165 aaaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaaaagaaaattcaatggagttttgactccaaggtttatttggaa--a 1663069  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 189  Q
          ||||||||||||||||||| ||||         | |||||| |||||||||||||| ||||||||||||||||||||||||||    
T  1663068 aattttcaagtgatggaatttgcttgttttgaaaaaattagtatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa 1662980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 15238475 - 15238290
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    ||||| |||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||       
T  15238475 aaaaagggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatttggaa-aa 15238378  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 189  Q
          ||||||||||||||| ||||||||        | ||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  15238377 aaatttcaagtgatggaatttacttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa 15238290  T

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Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 1895979 - 1895775
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||       
T  1895979 aaaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagagaaaattcaatggagttttgactccaaggtttatttggaa--a 1895883  T
Q  101 nnnnnncaagtgatggaatttgct--tattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatac 198  Q
          ||||||||||||||||||  | ||||          ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||    
T  1895882 aaatttcaagtgatggaatttgcttgtttttttggaaaattgatatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catac 1895787  T
Q  199 aacgtgtgtgcg 210  Q
    ||||||||||||    
T  1895786 aacgtgtgtgcg 1895775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 15219719 - 15219517
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    ||||| ||||||||||||||||||||||||||| |||||   ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||       
T  15219719 aaaaagggtctaagttggaattagagttcatttaagtttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatttggaa-aa 15219622  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||| ||||||||        | ||||||| |||||||||| ||| ||||||||||||||||||||||||||    |||||||    
T  15219621 aaatttcaagtgatggaatttacttattttggaaaattg-atatttttctaagtatcgtgtttcctaagcatacatctaaagcggtaaa----catacaa 15219527  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  15219526 cgtgtgtgcg 15219517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 3 - 189
Target Start/End: Original strand, 26406785 - 26406971
Alignment:
Q  3 aaaaggtctaagttggaattaga-gttcatttgagtttttcttaagaaaataaaggg-aaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||| |||||||||||||||||| |||| |||||||||   ||||||||||||| || ||||||||||||||||| |||||||||||||||| ||||       
T  26406785 aaaaagtctaagttggaattagaagttcgtttgagtttga-ttaagaaaataaaaggtaaaattcaatggagttttgactccaaggtttatttggaa--a 26406881  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnnga-atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 189  Q
          ||||||||||||||||||||||||        || || ||||||||||||||||||| ||||||||||||||||||||||||||    
T  26406882 aaatttcaagtgatggaatttgcttattttggaaaattgatattttttcctaagtatcgcgtttcctaagcatacatctaaagcggtaaa 26406971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 14239873 - 14240072
Alignment:
Q  8 gtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnc 107  Q
    ||||||||||||||||  |||||||||| |||  |||||||||||||||||||||| ||||||||||| | |||||||||||||| | ||         |    
T  14239873 gtctaagttggaattat-gttcatttgaatttg-cttaagaaaataaagggaaaatgcaatggagttttggctccaaggtttattggaaaaaaattt--c 14239968  T
Q  108 aagtgatggaatttgcttattttnnnnnnnn-gaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 206  Q
    ||||||||||| ||||| |||||         ||||||||| |||||||||||||||||||||||| |||||||  |||||||||| |||||||||||||    
T  14239969 aagtgatggaacttgctaattttttgggaaatgaatatttttctaagtatcgcgttccctaagcatgcatctaagacggtaaatcaacatacaacgtgtg 14240068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 12785806 - 12785711
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||| |||||||||||||||||||||||||||||||||   |||||||||||||| |||| ||||||||||||| ||||||||| |||||| ||||    
T  12785806 aaaaagggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagagaaagttcaatggagtttggactccaagatttatttggaa 12785711  T

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Target: chr4; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 26461245 - 26461332
Alignment:
Q  3 aaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 92  Q
    |||||||||||||||| |||||||||  ||||||||||| ||||||||||||||||  ||| ||||||||||| ||||||||||||||||    
T  26461245 aaaaggtctaagttgggattagagtttgtttgagtttttattaagaaaataaaggg--aatacaatggagttttgactccaaggtttatt 26461332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 43 - 210
Target Start/End: Original strand, 16244909 - 16245068
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnncaagtgatggaatttgcttattttnnnnnnnngaat 142  Q
    ||||||||||||| | ||||| ||||||||||| |||||||||||||||| ||||         ||| ||||||||||||||| ||||        || |    
T  16244909 ttaagaaaataaaag-aaaatgcaatggagttttgactccaaggtttatttggaaaaaattt--caaatgatggaatttgcttgttttggaaaattga-t 16245004  T
Q  143 attttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||    |||||||||||||||||    
T  16245005 attttcctaagtatcgcgcttcctaagcatacatctaaagcggtaaa----catacaacgtgtgtgcg 16245068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 15269018 - 15269069
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 94  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  15269018 ttaagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 15269069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 15299360 - 15299411
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 94  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  15299360 ttaagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 15299411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 17087116 - 17087052
Alignment:
Q  142 tattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    |||||| |||||||||||||| ||||| ||||||||||||||||||||    |||||||||||||||||    
T  17087116 tatttttctaagtatcgcgtttcctaaacatacatctaaagcggtaaa----catacaacgtgtgtgcg 17087052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 18465086 - 18465139
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  18465086 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 18465139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 20757459 - 20757406
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  20757459 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 20757406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 20763850 - 20763797
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  20763850 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 20763797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 5199790 - 5199877
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  5199790 aaaaaagtctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 5199877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 19639416 - 19639504
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaa-attcaatggagtttcgactccaaggttt 89  Q
    ||||| || ||||| ||||||||  |||||||| | |||  ||||||||||||||| ||| |||||||||||||| |||||||||||||    
T  19639416 aaaaaagtttaagtaggaattaggattcatttgggatttggttaagaaaataaaggaaaagattcaatggagttttgactccaaggttt 19639504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 22727378 - 22727465
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  22727378 aaaaaagtctaagtaggaattaggattcatttg-gatttgattaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 22727465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 16281306 - 16281253
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||||| ||||| |||||||| || |||||||||||||||||||||    
T  16281306 ttaagaaaataaagg-aaaatacaatggagctttgactccaaggtttattaggaa 16281253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 18044195 - 18044107
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa--ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  |||||||| | |||  ||||||||||||| ||||||  ||||||||||||| |||||||||||||    
T  18044195 aaaaaagtctaagtaggaattaggattcatttg-gatttggttaagaaaataaaaggaaaaaattcaatggagttttgactccaaggttt 18044107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 14675773 - 14675685
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    |||||| |||||||| || |||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  14675773 aaaaaaagtctaagtagggattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 14675685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 12785667 - 12785602
Alignment:
Q  141 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    ||||||| |||| |||| |||| | ||||||||||||||||||||||||    |||||||||||||||||    
T  12785667 atatttttctaaatatcacgtttcttaagcatacatctaaagcggtaaa----catacaacgtgtgtgcg 12785602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 13441326 - 13441239
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||| | |||| ||||||||||||| |||||||||||||    
T  13441326 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaagaaaaaattcaatggagttttgactccaaggttt 13441239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 15395929 - 15395979
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 94  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  15395929 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 15395979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 15399854 - 15399904
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 94  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  15399854 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 15399904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 17087211 - 17087158
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||| | ||||| ||||||||||| |||||||||||||||| ||||    
T  17087211 ttaagaaaataaaag-aaaatgcaatggagttttgactccaaggtttattgggaa 17087158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 26461380 - 26461443
Alignment:
Q  143 attttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    ||||| ||||| |||||||| ||||| |||||| |||||||||||||    |||||||||||||||||    
T  26461380 attttgctaagcatcgcgtttcctaaacatacacctaaagcggtaaa----catacaacgtgtgtgcg 26461443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 27167996 - 27167942
Alignment:
Q  38 ttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 92  Q
    |||||||||||||||||| |||||  |||| ||||||| |||||||| |||||||    
T  27167996 ttttcttaagaaaataaaaggaaacatcaaaggagttttgactccaaagtttatt 27167942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 14657330 - 14657251
Alignment:
Q  10 ctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    |||||| ||||||||  ||||||||  ||| | ||||||||||||| | |||| ||||||||||||| |||||||||||||    
T  14657330 ctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaagaaaaaattcaatggagttttgactccaaggttt 14657251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 15269112 - 15269176
Alignment:
Q  141 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    |||||||||||||||| ||||| ||||||||| ||||||| | ||||||    |||||||||||||||||    
T  15269112 atattttcctaagtattgcgtttcctaagcatgcatctaa-gaggtaaa----catacaacgtgtgtgcg 15269176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 28165930 - 28166135
Alignment:
Q  8 gtctaagttggaattagagttcattt-gagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnn 106  Q
    ||||| |||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||             
T  28165930 gtctatgttggaattaaagttcattttgagtttctcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaaaaaaaattt 28166029  T
Q  107 caagtgatggaatttgcttattttnnnnnnnn--gaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtg 204  Q
    ||||||||||||||||||||||||          ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28166030 caagtgatggaatttgcttatttttaaaaaagaagaatatttttctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtg 28166129  T
Q  205 tgtgcg 210  Q
    ||||||    
T  28166130 tgtgcg 28166135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 17787990 - 17787796
Alignment:
Q  8 gtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnc 107  Q
    ||||||||||||||||   ||||||  ||||||  ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||         |    
T  17787990 gtctaagttggaattaagattcattgaagttttgattaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaaagatttt-c 17787893  T
Q  108 aagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 207  Q
    |||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17787892 aagtgatggaatttgcttatt------aaaagaatattttcctaagtatcgcgttccctaagcatacatctaaagcagtaaatcatcatacaacgtgtgt 17787799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 19089511 - 19089317
Alignment:
Q  8 gtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnc 107  Q
    ||||||||||||||||   ||||||  ||||||  ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||         |    
T  19089511 gtctaagttggaattaagattcattgaagttttgattaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaaaagatttt-c 19089414  T
Q  108 aagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 207  Q
    |||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19089413 aagtgatggaatttgcttatt------aaaagaatattttcctaagtatcgcgttccctaagcatacatctaaagcagtaaatcatcatacaacgtgtgt 19089320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 15363948 - 15364150
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    ||||| |||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||       
T  15363948 aaaaagggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatttggaa-aa 15364045  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||| ||||||||        | ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||    
T  15364046 gattttcaagtgatggaatttacttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaa 15364140  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  15364141 cgtgtgtgcg 15364150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 18526038 - 18525835
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    ||||| |||||||||||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||       
T  18526038 aaaaagggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagagaaaattcaatggagttttgactccaaggtttatttggaa--a 18525942  T
Q  101 nnnnnncaagtgatggaatttgctt-attttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcataca 199  Q
          |||||||||||||||||||  ||||          ||||||| |||||||||||||| |||| |||||||||||||||||||||    ||||||    
T  18525941 atttttcaagtgatggaatttgcttgttttttggaaaattgatatttttctaagtatcgcgtttcctaggcatacatctaaagcggtaaa----cataca 18525846  T
Q  200 acgtgtgtgcg 210  Q
    |||||||||||    
T  18525845 acgtgtgtgcg 18525835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 23011695 - 23011897
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||       
T  23011695 aaaaaaggtctaagttggaattagagttcatttgag-tttgattaagaaaataaagagaaaattcaatggagttt-gactccaaggtttatttggaa--a 23011790  T
Q  101 nnnnnncaagtgatggaatttgctt-attttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcataca 199  Q
          |||||||||||||||||||  ||||          ||||||| |||||||||||||| |||| |||||||||||||||||||||    ||||||    
T  23011791 aattttcaagtgatggaatttgcttgttttttggaaaattgatatttttctaagtatcgcgtttcctaggcatacatctaaagcggtaaa----cataca 23011886  T
Q  200 acgtgtgtgcg 210  Q
    |||||||||||    
T  23011887 acgtgtgtgcg 23011897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 14141620 - 14141825
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||| ||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||       
T  14141620 aaaaaaggtctaagttgggattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaa-aa 14141717  T
Q  101 nnnnnncaagtgatggaatttgctta--ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatac 198  Q
          ||||||||||||||| | ||  ||||          ||||||| |||||||||||||| ||||| ||||||||||||||||||||    |||||    
T  14141718 aaatttcaagtgatggaatttacctatttttttggaaaattgatatttttctaagtatcgcgtttcctaaacatacatctaaagcggtaaa----catac 14141813  T
Q  199 aacgtgtgtgcg 210  Q
    ||||||||||||    
T  14141814 aacgtgtgtgcg 14141825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 11646885 - 11647073
Alignment:
Q  2 aaaaaggtctaagttggaatt-agagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||| | |||| |||||||||||| | |||  |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||       
T  11646885 aaaaaggtctaagtggaaatttagagttcatttg-gatttgattaagaaaataaagagaaaattcaatggagttttgactccaaggtttatttggaa--a 11646981  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcat 193  Q
          |||||||||||||||| |||||||        |  |||||| |||||||||||||| |||||||||||||||||||||| |||||||    
T  11646982 agttttcaagtgatggaatttgtttattttggaaaattg-gtatttttctaagtatcgcgtttcctaagcatacatctaaagcggcaaatcat 11647073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 189
Target Start/End: Original strand, 19627710 - 19627896
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnn 101  Q
    ||||| ||||||||||||||||||||| ||||||||||   ||||||||||||| |||||||||||||||||||  ||||||||||||||| ||||        
T  19627710 aaaaaagtctaagttggaattagagttaatttgagtttga-ttaagaaaataaaaggaaaattcaatggagttttaactccaaggtttatttggaa-aaa 19627807  T
Q  102 nnnnncaagtgatggaatttgctta-ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 189  Q
         ||||||||||||||| | || ||||          ||||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  19627808 aaattcaagtgatggaatttacctattttttggaaaattgatatttttctaagtatcgcgtttcctaaacatacatctaaagcggtaaa 19627896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 4654279 - 4654099
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    ||||||||| |||| ||||||||||||||||||||||||   |||||||||      |||||||||||||||||| |||||||||||||||| ||||       
T  4654279 aaaaaaggtgtaagctggaattagagttcatttgagtttga-ttaagaaaa------gaaaattcaatggagttttgactccaaggtttatttggaaaaa 4654187  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnng--aatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaa 188  Q
          ||||||||||||||||||| ||||           | |||||| |||||||||||||| |||||||||||||||||||||||||    
T  4654186 attt--caagtgatggaatttgcttgtttttgaaaaaaattagtatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaa 4654099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 10929771 - 10929824
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  10929771 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 10929824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 15475832 - 15475885
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  15475832 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 15475885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 29942773 - 29942720
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  29942773 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 29942720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 29991927 - 29991874
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  29991927 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 29991874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 4883152 - 4883065
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaaggga-aaattcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| | |||||||||||||||| |||||||||||||    
T  4883152 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaagaaattcaatggagttttgactccaaggttt 4883065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 8278950 - 8279037
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaaggga-aaattcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| | |||||||||||||||| |||||||||||||    
T  8278950 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaagaaattcaatggagttttgactccaaggttt 8279037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 8307760 - 8307847
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaaggga-aaattcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| | |||||||||||||||| |||||||||||||    
T  8307760 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaagaaattcaatggagttttgactccaaggttt 8307847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 22641407 - 22641494
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  22641407 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 22641494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 15371682 - 15371629
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    |||| |||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  15371682 ttaataaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 15371629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 16614797 - 16614851
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    |||||||||  || ||||||| ||||||||||| |||||||||||||||||||||    
T  16614797 ttaagaaaaataaaggaaaatacaatggagttttgactccaaggtttattaggaa 16614851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 16631120 - 16631174
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    |||||||||  || ||||||| ||||||||||| |||||||||||||||||||||    
T  16631120 ttaagaaaaataaaggaaaatacaatggagttttgactccaaggtttattaggaa 16631174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 22052063 - 22052009
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    |||||||||  || ||||||| ||||||||||| |||||||||||||||||||||    
T  22052063 ttaagaaaaataaaggaaaatacaatggagttttgactccaaggtttattaggaa 22052009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 18046911 - 18046823
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    |||||| |||||||| || |||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  18046911 aaaaaaagtctaagtagggattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 18046823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 18062974 - 18062886
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    |||||| |||||||| || |||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  18062974 aaaaaaagtctaagtagggattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 18062886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 10600905 - 10600818
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||   |||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  10600905 aaaaaagtctaagtaggaattaggagtcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 10600818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 15882137 - 15882224
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||| ||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  15882137 aaaaaagtctaagtaggagttaggattcatttg-gatttggttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 15882224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 19704961 - 19704917
Alignment:
Q  143 attttcctaagtatcgcgttccctaagcatacatctaaagcggta 187  Q
    ||||| |||||| ||||||| ||||||||||||||||||||||||    
T  19704961 atttttctaagtgtcgcgtttcctaagcatacatctaaagcggta 19704917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 36131310 - 36131363
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||||| ||||| ||||||||||| ||||  |||||||||||||||    
T  36131310 ttaagaaaataaagg-aaaatacaatggagttttgactaaaaggtttattaggaa 36131363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 8291611 - 8291524
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaaggga-aaattcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| | ||||||  ||||||||  ||| | ||||||||||||| | | |||||||||||||||| |||||||||||||    
T  8291611 aaaaaagtctaagtagaaattaggattcatttggatttgt-ttaagaaaataaaagaagaaattcaatggagttttgactccaaggttt 8291524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 15897316 - 15897403
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||| ||||  |||||||| | |||  |||||| |||||||| |||| ||||||||||||| |||||||||||||    
T  15897316 aaaaaagtctaagtaggagttaggattcatttg-gatttggttaagacaataaaggaaaaaattcaatggagttttgactccaaggttt 15897403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 18003258 - 18003171
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| | ||||||  ||||||||  ||| | ||||||||||||| | |||| ||||||||||||| |||||||||||||    
T  18003258 aaaaaagtctaagtagaaattaggattcatttggatttgt-ttaagaaaataaaagaaaaaattcaatggagttttgactccaaggttt 18003171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 35876408 - 35876321
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaaggga-aaattcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| | |||||| |||||||||  ||| | |||||||||||| || | ||| |||||||||||| |||||||||||||    
T  35876408 aaaaaagtctaagtagaaattagggttcatttggatttgt-ttaagaaaataagggaagaaaatcaatggagttttgactccaaggttt 35876321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 35891478 - 35891391
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaaggga-aaattcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| | |||||| |||||||||  ||| | |||||||||||| || | ||| |||||||||||| |||||||||||||    
T  35891478 aaaaaagtctaagtagaaattagggttcatttggatttgt-ttaagaaaataagggaagaaaatcaatggagttttgactccaaggttt 35891391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 8e-51; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 10115400 - 10115607
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||       
T  10115400 aaaaaaagtctaagttgaaattagagttcatttgagttttgcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaggaa--a 10115497  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||||||  ||||        | || |||| |||||||||||||||||||||||| |||||||  |||||||||| |||||||    
T  10115498 aattttcaagtgatggaatttgctagttttttgaaaatgtatttttttctaagtatcgcgttccctaagcatgcatctaagacggtaaatcaacatacaa 10115597  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  10115598 cgtgtgtgcg 10115607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 18085950 - 18085747
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnn 101  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||        
T  18085950 aaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattaagaa---a 18085855  T
Q  102 nnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaac 201  Q
         ||||||||||||||| ||||||||        | ||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  18085854 agtttcaagtgatggaatttacttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaatcaacatacaac 18085756  T
Q  202 gtgtgtgcg 210  Q
     ||||||||    
T  18085755 ctgtgtgcg 18085747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 21692945 - 21693146
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    ||||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||       
T  21692945 aaaaaaggtctaagttggaattatagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttgtttggaa--a 21693041  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||||||||||||        | ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||    
T  21693042 aaatttcaagtgatggaatttgcttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaa 21693136  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  21693137 cgtgtgtgcg 21693146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 21707727 - 21707928
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||| || | ||       
T  21707727 aaaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttgtttgaaa--a 21707823  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||||||||||||        | ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||    
T  21707824 aaaattcaagtgatggaatttgcttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaa 21707918  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  21707919 cgtgtgtgcg 21707928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 17260400 - 17260195
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||         
T  17260400 aaaaaaagtctaagttggaattagagttcatttgagttttgcttaagaaaataaagggaaaattcaatggagttttgactccaaggtttattagg--gga 17260303  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||||| || |||        | || |||| ||||||| |||| ||||||||||| |||||||  |||||||||| |||||||    
T  17260302 aattttcaagtgatggaatttgc-tagtttttgaaaatgtat-tttttctaagtagcgcgctccctaagcatgcatctaagacggtaaatcaacatacaa 17260205  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  17260204 cgtgtgtgcg 17260195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 19446190 - 19446241
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 94  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  19446190 ttaagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 19446241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 19460999 - 19461050
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 94  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  19460999 ttaagaaaataaagggaaaatacaatggagtgttgactccaaggtttattag 19461050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 12651223 - 12651136
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  12651223 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 12651136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 12666144 - 12666057
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  12666144 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 12666057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 28269304 - 28269391
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  28269304 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 28269391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 20831781 - 20831694
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaa-attcaatggagtttcgactccaaggttt 89  Q
    ||||| || ||||| ||||||||  |||||||| | |||  ||||||||||||||| ||| |||||||||||||| |||||||||||||    
T  20831781 aaaaaagtttaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaagattcaatggagttttgactccaaggttt 20831694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 22700267 - 22700173
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    |||||| |||||||| |||||||   ||||||||| |||   ||||||||||||||| |||||  ||| |||||| |||||||||||||||||||||    
T  22700267 aaaaaatgtctaagtaggaattaagattcatttgaatttga-ttaagaaaataaagg-aaaatagaattgagttttgactccaaggtttattaggaa 22700173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 19556451 - 19556501
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 94  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  19556451 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 19556501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 27388647 - 27388597
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 94  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  27388647 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 27388597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 27399708 - 27399658
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 94  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  27399708 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 27399658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 34263404 - 34263491
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||   |||||||  ||| | ||||||||||||||  |||| ||||||||||||| |||||||||||||    
T  34263404 aaaaaagtctaagtaggaattaggagtcatttggatttgt-ttaagaaaataaagaaaaaaattcaatggagttttgactccaaggttt 34263491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 34306203 - 34306290
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||   |||||||  ||| | ||||||||||||||  |||| ||||||||||||| |||||||||||||    
T  34306203 aaaaaagtctaagtaggaattaggagtcatttggatttgt-ttaagaaaataaagaaaaaaattcaatggagttttgactccaaggttt 34306290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 7290 - 7491
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||       
T  7290 aaaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaa--a 7386  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||||||||||||        | ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||    
T  7387 aattttcaagtgatggaatttgcttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaa 7481  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  7482 cgtgtgtgcg 7491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 77245 - 77044
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||       
T  77245 aaaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaa--a 77149  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||||||||||||        | ||||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||    
T  77148 aattttcaagtgatggaatttgcttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaa 77054  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  77053 cgtgtgtgcg 77044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 99410 - 99209
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||       
T  99410 aaaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaa--a 99314  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||||||||||||        | ||||||| |||||||| ||||| ||||||||||||||||||||||||||    |||||||    
T  99313 aattttcaagtgatggaatttgcttattttggaaaattg-atatttttctaagtattgcgtttcctaagcatacatctaaagcggtaaa----catacaa 99219  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  99218 cgtgtgtgcg 99209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 180332 - 180132
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnn 101  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||        
T  180332 aaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatttggaa--aa 180236  T
Q  102 nnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaac 201  Q
         ||||||||||||||| ||||||||        | ||||||| |||||||| ||||| ||||||||||||||||||||||||||    ||||||||    
T  180235 attttcaagtgatggaattttcttattttggaaaattg-atatttttctaagtattgcgtttcctaagcatacatctaaagcggtaaa----catacaac 180141  T
Q  202 gtgtgtgcg 210  Q
    |||||||||    
T  180140 gtgtgtgcg 180132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0954 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0954
Description:

Target: scaffold0954; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 3013 - 2811
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    |||||||||||||||||||||||||||||||||||||||   |||||||||||||  |||||||||||||||||| |||||||||||||||| ||||       
T  3013 aaaaaaggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaaaagaaaattcaatggagttttgactccaaggtttatttggaa--a 2917  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||||||| ||||         | |||||| |||||||||||||| ||||||||||||||||||||||||||    |||||||    
T  2916 aattttcaagtgatggaatttgcttgttttgaaaaaattagtatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaa 2821  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  2820 cgtgtgtgcg 2811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 23608 - 23406
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannn 100  Q
    ||||| |||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||       
T  23608 aaaaagggtctaagttggaattagagttcatttgagtttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatttggaa-at 23511  T
Q  101 nnnnnncaagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
          ||||||||||||||| ||||||||        | ||||||| |||||||||||||| |||||||||||||||||||||||| |    |||||||    
T  23510 ttttttcaagtgatggaatttacttattttggaaaattg-atatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaga----catacaa 23416  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  23415 cgtgtgtgcg 23406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 126236 - 126034
Alignment:
Q  8 gtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnc 107  Q
    ||||||||| |||||| ||||||||||| |||| |||||||||||||||||||| | ||||||||||| ||||||||||||||||  |||         |    
T  126236 gtctaagtttgaattaaagttcatttgaattttgcttaagaaaataaagggaaagtgcaatggagttttgactccaaggtttatt-tgaaaaaaaatttc 126138  T
Q  108 aagtgatggaatttgctta-ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 206  Q
    ||||||||||| ||||| | ||||        ||||||||| ||||||||| |||||||||||||| |||||||  |||||||||| |||||||||||||    
T  126137 aagtgatggaacttgctaactttttgggaaatgaatatttttctaagtatcacgttccctaagcatgcatctaagacggtaaatcaacatacaacgtgtg 126038  T
Q  207 tgcg 210  Q
    ||||    
T  126037 tgcg 126034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 22964 - 22763
Alignment:
Q  8 gtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnc 107  Q
    |||||||||||||||| ||||||||||| |||| |||||||||||||||| ||| | ||||||||||| |||||||||||||||| | ||         |    
T  22964 gtctaagttggaattaaagttcatttgaattttgcttaagaaaataaaggaaaagtgcaatggagttttgactccaaggtttatttgaaa--aaattttc 22867  T
Q  108 aagtgatggaatttgctta-ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtg 206  Q
    ||||||||||| || || | ||||        ||||||||| |||||||||||||||||||||||| |||||||  |||||||||| |||||||||||||    
T  22866 aagtgatggaactttctaattttttgggaaatgaatatttttctaagtatcgcgttccctaagcatgcatctaagacggtaaatcaacatacaacgtgtg 22767  T
Q  207 tgcg 210  Q
    ||||    
T  22766 tgcg 22763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0322 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 17714 - 17520
Alignment:
Q  8 gtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnnnnnnc 107  Q
    |||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||         |    
T  17714 gtctaagttggatttaacattcatttgagtttttcttaagaaaataaagggaaaattcaatggagttttgact-caaggtttattaggaa-ttttttttc 17617  T
Q  108 aagtgatggaatttgcttattttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgt 207  Q
    |||||||||||||||||||||||        |  |||||| |||||||||| ||||||||||||| |||||||  |||||||    ||||||||||||||    
T  17616 aagtgatggaatttgcttattttttgaaaatg--tatttttctaagtatcgtgttccctaagcatgcatctaagacggtaaa----catacaacgtgtgt 17523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 5526 - 5612
Alignment:
Q  5 aaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttatt 92  Q
    ||||||||||||||||||||||||||||||| |||   ||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  5526 aaggtctaagttggaattagagttcatttgaatttga-ttaagaaaataaaggaaaaattcaatggagttttgactccaaggtttatt 5612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 5663 - 5709
Alignment:
Q  143 attttcctaagtatcgcgttccctaagcatacatctaaagcggtaaa 189  Q
    ||||| ||||||||||| || ||||||||||||||||||||||||||    
T  5663 atttttctaagtatcgcatttcctaagcatacatctaaagcggtaaa 5709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 22865 - 22665
Alignment:
Q  3 aaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnn 102  Q
    |||| ||||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||| ||| |||||||||||||||| ||||         
T  22865 aaaatgtctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggatttttgactccaaggtttattcggaa--aaa 22770  T
Q  103 nnnncaagtgatggaatttgctta-ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaac 201  Q
        |||||||||||||||||||| ||||          | ||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||||    
T  22769 ttttcaagtgatggaatttgcttattttttggaaaattgacatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaac 22674  T
Q  202 gtgtgtgcg 210  Q
    |||||||||    
T  22673 gtgtgtgcg 22665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 49979 - 50179
Alignment:
Q  3 aaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnn 102  Q
    |||| ||||||||||||||||||||||||||||| |||  |||||||||||||  |||||| ||||||| ||| |||||||||||||||| ||||         
T  49979 aaaatgtctaagttggaattagagttcatttgag-tttgattaagaaaataaa-agaaaatgcaatggatttttgactccaaggtttattcggaa--aaa 50074  T
Q  103 nnnncaagtgatggaatttgctta-ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaac 201  Q
        |||||||||||||||||||| ||||          | ||||| |||||||||||||| ||||||||||||||||||||||||||    ||||||||    
T  50075 ttttcaagtgatggaatttgcttattttttggaaaattgacatttttctaagtatcgcgtttcctaagcatacatctaaagcggtaaa----catacaac 50170  T
Q  202 gtgtgtgcg 210  Q
    |||||||||    
T  50171 gtgtgtgcg 50179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 1376 - 1457
Alignment:
Q  15 ttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||| |||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  1376 ttggaattaaagttcatttgagtttga-ttaagaaaataaagggaaaattcaatggagttttgactccaaggtttatttggaa 1457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 1500 - 1564
Alignment:
Q  143 attttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    ||||| |||||||| ||||||||||| |||||||||||  ||||||   | |||||||||||||||||    
T  1500 atttttctaagtatagcgttccctaaacatacatctaagacggtaa---accatacaacgtgtgtgcg 1564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 17656 - 17455
Alignment:
Q  3 aaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaannnnn 102  Q
    |||| ||||||||||||||||||||| ||||||| |||  |||||||||||||  |||||| ||||||||||| |||||||||||||||| ||||         
T  17656 aaaatgtctaagttggaattagagtttatttgag-tttgattaagaaaataaa-agaaaatgcaatggagttttgactccaaggtttattcggaa--aaa 17561  T
Q  103 nnnncaagtgatggaatttgctta--ttttnnnnnnnngaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaa 200  Q
        |||||||||||||||| |||  ||||          | ||||| |||||| ||||||| ||||||||||||||||||||||||||    |||||||    
T  17560 ttttcaagtgatggaatttgtttatttttttggaaaattgacatttttctaagtgtcgcgtttcctaagcatacatctaaagcggtaaa----catacaa 17465  T
Q  201 cgtgtgtgcg 210  Q
    ||||||||||    
T  17464 cgtgtgtgcg 17455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 12767 - 12672
Alignment:
Q  3 aaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||| | | ||| ||||||||   |||||  |||||||||||||| ||||| ||||||||||||| |||||||||||||||| ||||    
T  12767 aaaaggtctaagtagaagttaaagttcattgaggttttgattaagaaaataaagagaaaagttcaatggagttttgactccaaggtttatttggaa 12672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 10963 - 11016
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  10963 ttaagaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 11016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 17262 - 17177
Alignment:
Q  8 gtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 94  Q
    |||||||| |||||||   |||||| |||||||  ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  17262 gtctaagtaggaattaagattcattggagttttgattaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 17177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 31506 - 31421
Alignment:
Q  8 gtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 94  Q
    |||||||| |||||||   |||||| |||||||  ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  31506 gtctaagtaggaattaagattcattggagttttgattaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 31421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 17133 - 17069
Alignment:
Q  141 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    ||||||| |||||||| ||||| ||||| ||||||||| ||||||||||    |||||||||||||||||    
T  17133 atatttttctaagtattgcgtttcctaaacatacatct-aagcggtaaa----catacaacgtgtgtgcg 17069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 31377 - 31313
Alignment:
Q  141 atattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtgcg 210  Q
    ||||||| |||||||| ||||| ||||| ||||||||| ||||||||||    |||||||||||||||||    
T  31377 atatttttctaagtattgcgtttcctaaacatacatct-aagcggtaaa----catacaacgtgtgtgcg 31313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 26221 - 26308
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  |||||||| | |||  ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  26221 aaaaaagtctaagtaggaattaggattcatttg-gatttgattaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 26308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 72661 - 72748
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  72661 aaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 72748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 15236 - 15286
Alignment:
Q  46 agaaaataaagggaaaattcaatggagtttcgactccaaggtttattaggaa 97  Q
    |||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  15236 agaaaataaagg-aaaatacaatggagttttgactccaaggtttattaggaa 15286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 15323 - 15387
Alignment:
Q  139 gaatattttcctaagtatcgcgttccctaagcatacatctaaagcggtaaatcatcatacaacgtgtgtg 208  Q
    |||||||||| ||||||||||||  ||||| |||||||||||| |||||||    |||||||||||||||    
T  15323 gaatattttc-taagtatcgcgtctcctaaacatacatctaaaacggtaaa----catacaacgtgtgtg 15387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 11342 - 11429
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaa-ttcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| || |||||  ||||||||  ||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  11342 aaaaaagtctaagtagggattaggattcatttggatttgt-ttaagaaaataaaggaaaaaattcaatggagttttgactccaaggttt 11429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 25481 - 25393
Alignment:
Q  2 aaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat--tcaatggagtttcgactccaaggttt 89  Q
    ||||| |||||||| ||||||||  |||||||| | |||  ||||||||||||||| ||||   |||||||||||| |||||||||||||    
T  25481 aaaaaagtctaagtaggaattaggattcatttg-gatttggttaagaaaataaaggaaaaaaaatcaatggagttttgactccaaggttt 25393  T

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Target: scaffold0186 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 13290 - 13379
Alignment:
Q  1 aaaaaaggtctaagttggaattagagttcatttgagtttttcttaagaaaataaagggaaaat--tcaatggagtttcgactccaaggttt 89  Q
    |||||| |||||||| ||||||||  ||||||||  ||| | ||||||||||||||| ||||   |||||||||||| |||||||||||||    
T  13290 aaaaaaagtctaagtaggaattaggattcatttggatttgt-ttaagaaaataaaggaaaaaaaatcaatggagttttgactccaaggttt 13379  T

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Target: scaffold0174 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 8547 - 8497
Alignment:
Q  43 ttaagaaaataaagggaaaattcaatggagtttcgactccaaggtttattag 94  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  8547 ttaagaaaataaagg-aaaatacaatggagtgttgactccaaggtttattag 8497  T

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