View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7710_low_66 (Length: 204)

Name: NF7710_low_66
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7710_low_66
NF7710_low_66
[»] chr2 (2 HSPs)
chr2 (10-171)||(44039957-44040110)
chr2 (66-171)||(3130166-3130267)
[»] chr4 (6 HSPs)
chr4 (10-168)||(52206403-52206557)
chr4 (74-171)||(44348836-44348929)
chr4 (85-171)||(52207226-52207308)
chr4 (41-138)||(56459693-56459789)
chr4 (76-132)||(30765437-30765493)
chr4 (79-170)||(53522833-53522921)
[»] chr8 (5 HSPs)
chr8 (63-168)||(5664239-5664340)
chr8 (116-171)||(31042729-31042780)
chr8 (95-166)||(29703482-29703549)
chr8 (63-93)||(31042781-31042811)
chr8 (74-138)||(42104429-42104493)
[»] chr5 (3 HSPs)
chr5 (41-138)||(34064820-34064916)
chr5 (63-168)||(2707418-2707517)
chr5 (75-171)||(14395342-14395434)
[»] chr1 (1 HSPs)
chr1 (41-138)||(19402354-19402450)
[»] chr7 (1 HSPs)
chr7 (75-138)||(3233378-3233441)
[»] chr3 (3 HSPs)
chr3 (75-137)||(54515787-54515849)
chr3 (57-138)||(18371399-18371479)
chr3 (74-138)||(7723995-7724059)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 44039957 - 44040110
Alignment:
Q  10 aagaatatgaaaaggtaaaacaggtttatatgaaatgatagactagagagaggcacatgtgagtctttttaatctgaaccatttgtttttgatccaaggg 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  44039957 aagaagatgaaaaggtaaaacaggtttatatgaaatgatagactagagagaggcacatgtgagtcttt-------gaaccatttgtttttgatccaaggg 44040049  T
Q  110 ttgagaagtattctcaccattctcatatatataactaactcattctcactagatatgtcctc 171  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||    
T  44040050 ttgagaagtattctcaccattctcatatatataactaatccattctcact-gatatgtcctc 44040110  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 66 - 171
Target Start/End: Original strand, 3130166 - 3130267
Alignment:
Q  66 atgtgagtctttttaatctgaaccatttgtttttgatccaagggttgagaagtattctcaccattctcatatatataactaactcattctcactagatat 165  Q
    ||||||||||||||||||| || ||||| ||||||||| ||||||||||||||||||||||||||||    ||||||||| ||||||||||| || ||||    
T  3130166 atgtgagtctttttaatcttaatcatttatttttgatctaagggttgagaagtattctcaccattct----tatataacttactcattctcaatacatat 3130261  T
Q  166 gtcctc 171  Q
    ||||||    
T  3130262 gtcctc 3130267  T

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Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 52206557 - 52206403
Alignment:
Q  10 aagaatatgaaaaggtaaaacaggtttatatgaaatgatagactagagagaggcacatgtgagtctttttaatctgaaccatttgtttttgatccaaggg 109  Q
    ||||| |||||||||| |||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  52206557 aagaagatgaaaaggtgaaacaggtttataaaaaatgatagactagagagagacacatgtgagtctttttaatctgaaccatttatttttgatccaaggg 52206458  T
Q  110 ttgagaagtattctcaccattctcatatatataactaactcattctcactagatatgtc 168  Q
    |||||||||||||||||||||||||    |||||||||  |||||||||||||||||||    
T  52206457 ttgagaagtattctcaccattctca----tataactaagccattctcactagatatgtc 52206403  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 44348836 - 44348929
Alignment:
Q  74 ctttttaatctgaaccatttgtttttgatccaagggttgagaagtattctcaccattctcatatatataactaactcattctcactagatatgtcctc 171  Q
    ||||||||||| ||||||   ||||||||| ||||||||||||||||| |||||||||||    |||||||| || ||||||||||||||||||||||    
T  44348836 ctttttaatctcaaccatcaatttttgatctaagggttgagaagtattttcaccattctc----atataacttacccattctcactagatatgtcctc 44348929  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 52207226 - 52207308
Alignment:
Q  85 gaaccatttgtttttgatccaagggttgagaagtattctcaccattctcatatatataactaactcattctcactagatatgtcctc 171  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||| ||    || |||||||  ||||||||||||||||||||||    
T  52207226 gaaccatttatttttgatccaagggttgagaagtattctaaccattgtc----atgtaactaagccattctcactagatatgtcctc 52207308  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 56459693 - 56459789
Alignment:
Q  41 gaaatgatagactagagagaggcacatgtgagtctttttaatctgaaccatttgtttttgatccaagggttgagaagtattctcaccattctcatata 138  Q
    ||||||||||| ||| | ||| ||||||| ||| ||| ||||||| ||||||| ||||| ||| || |||||| |||| |||||||||||||||||||    
T  56459693 gaaatgatagaatag-gtgagacacatgtaagtttttgtaatctggaccatttatttttaatctaaaggttgataagtgttctcaccattctcatata 56459789  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 30765437 - 30765493
Alignment:
Q  76 ttttaatctgaaccatttgtttttgatccaagggttgagaagtattctcaccattct 132  Q
    |||||||||| |||| |||||||||||| || |||||| ||||||||||||||||||    
T  30765437 ttttaatctggaccacttgtttttgatctaaaggttgataagtattctcaccattct 30765493  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 53522921 - 53522833
Alignment:
Q  79 taatctgaaccatttgtttttgatccaag-ggttgagaagtattctcaccattctcatatatataactaactcattctcactagatatgtcct 170  Q
    ||||||||||||||| ||| ||| | ||  |||||| |||| |||||||||||||||||||    | |||| |||||||||||||||||||||    
T  53522921 taatctgaaccatttatttctgacctaaaaggttgataagtgttctcaccattctcatata----attaacccattctcactagatatgtcct 53522833  T

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Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 5664239 - 5664340
Alignment:
Q  63 cacatgtgagtctttttaatctgaaccatttgtttttgatccaagggttgagaagtattctcaccattctcatatatataactaactcattctcactaga 162  Q
    |||||||||| ||||| |||| ||||||||| ||||| ||| || |||||| |||| ||||||||||||||    |||||| |||| |||||||||||||    
T  5664239 cacatgtgagacttttaaatccgaaccatttatttttcatctaaaggttgataagtgttctcaccattctc----atataattaacccattctcactaga 5664334  T
Q  163 tatgtc 168  Q
    ||||||    
T  5664335 tatgtc 5664340  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 31042780 - 31042729
Alignment:
Q  116 agtattctcaccattctcatatatataactaactcattctcactagatatgtcctc 171  Q
    |||||||||||||||||||||||    ||||| |||||||||||||||||||||||    
T  31042780 agtattctcaccattctcatata----actaagtcattctcactagatatgtcctc 31042729  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 29703482 - 29703549
Alignment:
Q  95 tttttgatccaagggttgagaagtattctcaccattctcatatatataactaactcattctcactagatatg 166  Q
    ||||||||| || |||||| |||| ||||||||||||||    | |||| ||||||||||||||||||||||    
T  29703482 tttttgatctaaaggttgataagtgttctcaccattctc----acataattaactcattctcactagatatg 29703549  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 93
Target Start/End: Complemental strand, 31042811 - 31042781
Alignment:
Q  63 cacatgtgagtctttttaatctgaaccattt 93  Q
    |||||||||||||||||||||||||||||||    
T  31042811 cacatgtgagtctttttaatctgaaccattt 31042781  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 42104493 - 42104429
Alignment:
Q  74 ctttttaatctgaaccatttgtttttgatccaagggttgagaagtattctcaccattctcatata 138  Q
    ||||||||||  |||||||| ||||||||| || |||||| ||  ||||||| ||||||||||||    
T  42104493 ctttttaatcacaaccatttatttttgatctaatggttgataatcattctcatcattctcatata 42104429  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 34064820 - 34064916
Alignment:
Q  41 gaaatgatagactagagagaggcacatgtgagtctttttaatctgaaccatttgtttttgatccaagggttgagaagtattctcaccattctcatata 138  Q
    ||||||||||| ||| | ||| ||||||| ||| ||||||||||  ||||||| ||||| ||| || |||||| |||| |||||||||||||||||||    
T  34064820 gaaatgatagaatag-gtgagacacatgtaagtttttttaatctagaccatttatttttaatctaaaggttgataagtgttctcaccattctcatata 34064916  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 2707517 - 2707418
Alignment:
Q  63 cacatgtgagtctttttaatctgaaccatttgtttttgatccaagggttgagaagtattctcaccattctcatatatataactaactcattctcactaga 162  Q
    |||||||||| ||||| |||||| ||||||| ||||| ||| || |||||| |||  |||||||||||||||||||    | |||| |||||||||||||    
T  2707517 cacatgtgagcctttt-aatctggaccatttattttttatctaaaggttgataagg-ttctcaccattctcatata----attaacccattctcactaga 2707424  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 14395342 - 14395434
Alignment:
Q  75 tttttaatctgaaccatttgtttttgatccaagggttgagaagtattctcaccattctcatatatataactaactcattctcactagatatgtcctc 171  Q
    |||||||||||  |||||  ||||| |||||| |||||| |||| ||||||||||||||    | |||| ||||||||||||| |||||||| ||||    
T  14395342 tttttaatctggtccattcattttttatccaaaggttgataagtgttctcaccattctc----acataaataactcattctcattagatatgccctc 14395434  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 19402450 - 19402354
Alignment:
Q  41 gaaatgatagactagagagaggcacatgtgagtctttttaatctgaaccatttgtttttgatccaagggttgagaagtattctcaccattctcatata 138  Q
    ||||||||||| ||| | ||| ||||||| ||| ||| ||||||| ||||||| ||||| ||| || |||||| |||| |||||||||||||||||||    
T  19402450 gaaatgatagaatag-gtgagacacatgtaagtttttgtaatctggaccatttatttttaatctaaaggttgataagtgttctcaccattctcatata 19402354  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 3233378 - 3233441
Alignment:
Q  75 tttttaatctgaaccatttgtttttgatccaagggttgagaagtattctcaccattctcatata 138  Q
    |||||||||| | |||||| |||| |||| || |||| ||||||||||||||||||||||||||    
T  3233378 tttttaatcttatccatttattttagatctaatggttaagaagtattctcaccattctcatata 3233441  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 54515849 - 54515787
Alignment:
Q  75 tttttaatctgaaccatttgtttttgatccaagggttgagaagtattctcaccattctcatat 137  Q
    ||||||||||||| ||||| | ||||||| || |||| | ||||||||||| |||||||||||    
T  54515849 tttttaatctgaatcatttatatttgatctaaaggttcacaagtattctcatcattctcatat 54515787  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 18371479 - 18371399
Alignment:
Q  57 gagaggcacatgtgagtctttttaatctgaaccatttgtttttgatccaagggttgagaagtattctcaccattctcatata 138  Q
    ||||||||||| |||| ||||| ||||| || ||| |||||||||||  |||||| | || |||||||||||||||| ||||    
T  18371479 gagaggcacatatgaggctttt-aatctcaatcatctgtttttgatcagagggttcataaatattctcaccattctcttata 18371399  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 7724059 - 7723995
Alignment:
Q  74 ctttttaatctgaaccatttgtttttgatccaagggttgagaagtattctcaccattctcatata 138  Q
    ||||||||||| |||||||| || |||||| || ||||||  |  ||||||||||||||||||||    
T  7724059 ctttttaatctcaaccatttattattgatctaatggttgatgatcattctcaccattctcatata 7723995  T

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