View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_low_9 (Length: 515)
Name: NF7710_low_9
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 15 - 499
Target Start/End: Original strand, 1555321 - 1555797
Alignment:
| Q |
15 |
tatgcgacatcagtttgcatattcaaacactgctatacaagctaaagcttactaaccctgaatcttgttataacttataaataaaaccttnnnnnnn-tg |
113 |
Q |
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| T |
1555321 |
tatgcgacatcagtttgcatattcaaacactgctatacaagctaaagcttactaaccctgaatcttgttataacttataaataaaaccttaaaaaaaatg |
1555420 |
T |
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| Q |
114 |
acaatataatatgtgctgcacaaagcatggctggaaagacaactcgagggtattgcagatgttggaaagatgatcattgctggaaagacaactcagcaag |
213 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1555421 |
acaatataatatgtgctgcacaaagcaaggctggaaagacaactccagggtattgcagatgttggaaagatgatcattactggaaagacaactcagcaag |
1555520 |
T |
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| Q |
214 |
atggtaagaatgacaactagtttggatgttctataaccaaggaagaaaaagatttgtttgaatgatcatcagcaaaaatattttggcaagcaatatcaat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1555521 |
atggtaagaatgacaactagtttggatgttctataaccaaggaagaaaaagatttgtttgaatgatcatcagcaaaaatattttggcaagcaatatcaat |
1555620 |
T |
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| Q |
314 |
ttacgcacaaaaagaactaaaacttctttaaattgaccaagaacaatatttcaaatatatcaatatgattcacaacgagaagctggtacaatcattgttt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1555621 |
ttacgcacaaaaagaactaaaacttctttaaattgaccaagaacaatatttcaaatata----------tcacaacgagaagctggtacaatcattgttt |
1555710 |
T |
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| Q |
414 |
attaatcagtaacatggaatgatcatagtccaacagagaaagcaaaaggctactaaaaggatgtgaat-tcagacctgtgagtgttt |
499 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1555711 |
attaatcagtaacatggaatgatcatagtctaacagagaaagcaaaaggctactaaaaggatgtgaatatcagacctgtgagtgttt |
1555797 |
T |
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