View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_high_16 (Length: 282)
Name: NF7711_high_16
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 3076693 - 3076479
Alignment:
| Q |
1 |
atacagtataaacatatgtattttgaattgaagttaggtttttgaactaagataaaatgttaggtaaaaattgaatagaatcgaaggcaattacactact |
100 |
Q |
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| T |
3076693 |
atacagtataaacatatgtattttgaattgaagttaggtttttgaactaagataaaatgttaggtaaaaattgaatagaatcgaaggcaattacactact |
3076594 |
T |
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| Q |
101 |
agagaacacttgagcaatcacattcttaaagactacacagaaattcgaaaaacaagcaccaaaatgaagagaacaaaaaattgataggtgacaatagatc |
200 |
Q |
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| T |
3076593 |
agagaatacttgagcaatcacattcttagagactacacagaaattcgaaaaacaagcaccaaaatgaagagaacaaaaagttgataggtgacaatagatc |
3076494 |
T |
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| Q |
201 |
tgagaatggttcgat |
215 |
Q |
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| T |
3076493 |
tgagaatggttcgat |
3076479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 264
Target Start/End: Complemental strand, 3076459 - 3076428
Alignment:
| Q |
233 |
ggaggaacgtacttgaacaggaggatcgtaat |
264 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3076459 |
ggaggaacgtacttgaacaggaggatcgtaat |
3076428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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