View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_high_18 (Length: 243)
Name: NF7711_high_18
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_high_18 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 837344 - 837101
Alignment:
| Q |
18 |
gaaaaagtgatggaaaaagaccaaaagtgctttgtttggaagctataatagtgaacattagcatttgaaatgtgctaccatggaccttcaatgtagtatt |
117 |
Q |
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| T |
837344 |
gaaaaagtgatagaaaaagaccaaaagtgcttattttggaagctataatagtgaacattagcatttgaaatgtgctaccatggacctttaatgtagtatt |
837245 |
T |
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| Q |
118 |
gtattgattt-----------------caactaaggaattatgaaaatgcattttctttgttcatttatttgagctgaagg-nnnnnnncaaagtcttaa |
199 |
Q |
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| T |
837244 |
gtattgatttcaacaaatgtgttcattcaactaaggaattatgagaatgcattttctttgttcatttatttgagctgaaggaaataaaacatagtcttaa |
837145 |
T |
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| Q |
200 |
tttattagaatttatcttggcttgacatagtatagtagtatact |
243 |
Q |
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| T |
837144 |
tttattagaatttatcttggcttgacatagtatagtagtatact |
837101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 819211 - 819153
Alignment:
| Q |
18 |
gaaaaagtgatggaaaaagaccaaaagtgctttgtttggaagctataatagtgaacattag |
78 |
Q |
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|||||||||||||||||||||||| ||||||| || |||||||||| ||||||||||||| |
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| T |
819211 |
gaaaaagtgatggaaaaagaccaa--gtgcttttttcggaagctatagtagtgaacattag |
819153 |
T |
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