View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7711_high_21 (Length: 221)
Name: NF7711_high_21
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_high_21 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 21)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 2748854 - 2748646
Alignment:
| Q |
1 |
ataatttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2748854 |
ataatttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccgcatctaggagg |
2748755 |
T |
|
| Q |
101 |
attggtcctatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgtta |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2748754 |
attggccctatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgtta |
2748655 |
T |
|
| Q |
201 |
gtctctgct |
209 |
Q |
| |
|
|| |||||| |
|
|
| T |
2748654 |
gtgtctgct |
2748646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 6 - 196
Target Start/End: Complemental strand, 2797212 - 2797022
Alignment:
| Q |
6 |
ttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattgg |
105 |
Q |
| |
|
||||||| || ||| ||||||||||| || ||| ||| |||||| ||||||||| | ||||||||||||| |||||||||||| |||| ||||||| || |
|
|
| T |
2797212 |
ttaatgttcttaatctcagatgctatctggtgaagggaaatcaatgttttgattagacttgcaatcttgcagactaaagatccgcatcccggaggatagg |
2797113 |
T |
|
| Q |
106 |
tcctatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatc |
196 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
2797112 |
ccctatgcatcagctgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagatgcttcacccaagttcttattccatc |
2797022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 6 - 196
Target Start/End: Complemental strand, 5412758 - 5412568
Alignment:
| Q |
6 |
ttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattgg |
105 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||| ||||||||||| |||| | |||||||| |
|
|
| T |
5412758 |
ttaatgtcctgaatctcagatgctatctgatgatggggaatcaaagttttgatcaagcttgcaatcttgcagactaaagatctgcatccaagaggattga |
5412659 |
T |
|
| Q |
106 |
tcctatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatc |
196 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
5412658 |
ccctatgcattagccgatggtattcgtcaatgacatcttcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttattccatc |
5412568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 6 - 209
Target Start/End: Complemental strand, 2768920 - 2768717
Alignment:
| Q |
6 |
ttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattgg |
105 |
Q |
| |
|
|||||||||||||| || |||| || | |||||||||| |||||||||||||| | |||||||||||| || ||||||||| | ||| ||| |||||| |
|
|
| T |
2768920 |
ttaatgtcctgaatctctaatgcaattttatgacggggagtcaaagttttgattaggcttgcaatcttgaagattaaagatccgcgtctgggacgattgg |
2768821 |
T |
|
| Q |
106 |
tcctatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgttagtctc |
205 |
Q |
| |
|
|||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
2768820 |
ccctatgggtcaaccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgttggtgtc |
2768721 |
T |
|
| Q |
206 |
tgct |
209 |
Q |
| |
|
|||| |
|
|
| T |
2768720 |
tgct |
2768717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 2856100 - 2856287
Alignment:
| Q |
9 |
atgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcc |
108 |
Q |
| |
|
||||||||||| || ||||| || | |||| |||||||||||||||||||| | |||| || |||| |||||||||||||| || | ||||||||| || |
|
|
| T |
2856100 |
atgtcctgaatctctgatgcaattttatgatggggaatcaaagttttgattcggcttgtaaccttgttgactaaagatccacgtccatgaggattggccc |
2856199 |
T |
|
| Q |
109 |
tatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatc |
196 |
Q |
| |
|
|||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2856200 |
tatgtatcaaccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatc |
2856287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 2838920 - 2839080
Alignment:
| Q |
36 |
tgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaa |
135 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | || ||| |||||||| |||| ||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
2838920 |
tgacggggaatcaaagttttgattaaccttggagtcatgca---taaagatctgcatccaggaggattggccctatgcattagtcgaaggtattcatcaa |
2839016 |
T |
|
| Q |
136 |
tgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgtt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2839017 |
tgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgtt |
2839080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 2790203 - 2790006
Alignment:
| Q |
21 |
tcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccac---atctaggaggattggt------cctat |
111 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||| | ||||||||||||| || ||||||| || ||| || |||||||| ||||| |
|
|
| T |
2790203 |
tcagatgctatctgatgatggggaatcaaagttttgattaggcttgcaatcttgcagaataaagattgacggcatccagaaggattggattttgccctat |
2790104 |
T |
|
| Q |
112 |
gcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgttagtctctgct |
209 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |
|
|
| T |
2790103 |
gcatgagccgaaggtattcatcgatgatatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcattggtgtctgct |
2790006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 2755782 - 2755705
Alignment:
| Q |
119 |
ccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2755782 |
ccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcatatgcttcacccaagttcttattccatc |
2755705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 193
Target Start/End: Complemental strand, 2759035 - 2758878
Alignment:
| Q |
36 |
tgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaa |
135 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||||||| || || |||||| | | ||||||||||| | |||| || |||||||||||||| |||| |
|
|
| T |
2759035 |
tgacggggaatcaaagttttgattgggcttgtaatcttgttgaatacagatccgctaccaggaggattggccgtatggatcagccgaaggtattcgtcaa |
2758936 |
T |
|
| Q |
136 |
tgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattcc |
193 |
Q |
| |
|
| | ||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
2758935 |
ttatatcttcaatgcgaaacgatgcttctctcatatgcttcacccatgttcttattcc |
2758878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 2818405 - 2818218
Alignment:
| Q |
9 |
atgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcc |
108 |
Q |
| |
|
||||||||||| || ||||| || | || ||||||| ||||||| || ||| |||| |||||||| || ||||||| |||| |||| |||||||| |
|
|
| T |
2818405 |
atgtcctgaatctctgatgcaatttcataacggggagtcaaagtcttcattaatcttggaatcttgcataccaaagatctgcatcctggagaattggtcc |
2818306 |
T |
|
| Q |
109 |
tatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatc |
196 |
Q |
| |
|
|||| || | |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
2818305 |
tatggatcaaaagaaggtattcatcaatgacatcttcaatgcgaaatgatgcatctctcacttgcttcacccatgttcttattccatc |
2818218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 2807104 - 2806909
Alignment:
| Q |
23 |
agatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccac---atctaggaggattggt------cctatgc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||| || | ||||||||| ||| ||||||| ||| | ||||| |
|
|
| T |
2807104 |
agatgctatatgatgacggggaatcaaagttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgc |
2807005 |
T |
|
| Q |
114 |
attagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgttagtctctgct |
209 |
Q |
| |
|
|| |||||| |||||||||| |||| |||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||| || || |||||| |
|
|
| T |
2807004 |
atcagccgatggtattcatcgatgatatcttcaatgcgaaatgatgcttcgcgcagctgctttacccaagttctaattccatcatttgtgtctgct |
2806909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 3200681 - 3200611
Alignment:
| Q |
129 |
tcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgtt |
199 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||| | ||||| ||||| |
|
|
| T |
3200681 |
tcatcaatcacatcttctatgcgaaaagatgcttctcttagctgcttcacccaagttttgattccttcgtt |
3200611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 3357767 - 3357837
Alignment:
| Q |
129 |
tcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgtt |
199 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||| | ||||| ||||| |
|
|
| T |
3357767 |
tcatcaatcacatcttctatgcgaaaagatgcttctcttagctgcttcacccaagttttgattccttcgtt |
3357837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 3221871 - 3221925
Alignment:
| Q |
131 |
atcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagtt |
185 |
Q |
| |
|
|||||| |||||||| ||| |||| ||||||||||| |||||||||||||||||| |
|
|
| T |
3221871 |
atcaatcacatcttctatgtgaaaagatgcttctcttagctgcttcacccaagtt |
3221925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 3280653 - 3280707
Alignment:
| Q |
131 |
atcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagtt |
185 |
Q |
| |
|
|||||| |||||||| || ||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
3280653 |
atcaatcacatcttctatacgaaaagatgcttctcttagctgcttcacccaagtt |
3280707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 22632632 - 22632678
Alignment:
| Q |
129 |
tcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt |
175 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||| |||||||||| |
|
|
| T |
22632632 |
tcatcaatgacatcttcaatgtgaaaagatgcttctatcagctgctt |
22632678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 22636273 - 22636319
Alignment:
| Q |
129 |
tcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt |
175 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||| |||||||||| |
|
|
| T |
22636273 |
tcatcaatgacatcttcaatgtgaaaagatgcttctatcagctgctt |
22636319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 21936858 - 21936799
Alignment:
| Q |
126 |
tattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagtt |
185 |
Q |
| |
|
||||||||||||| |||||| |||| ||| | |||||| || |||||||||||||||||| |
|
|
| T |
21936858 |
tattcatcaatgatatcttctatgcaaaaagctgcttccctaagctgcttcacccaagtt |
21936799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 22358772 - 22358818
Alignment:
| Q |
129 |
tcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt |
175 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||||| |||||||||| |
|
|
| T |
22358772 |
tcatcaatgacatcttctatgtgaaaagatgcttctatcagctgctt |
22358818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 22459223 - 22459272
Alignment:
| Q |
126 |
tattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt |
175 |
Q |
| |
|
||||||||||||||||||| ||||| ||| ||||||||| | |||||||| |
|
|
| T |
22459223 |
tattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgctt |
22459272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 22482204 - 22482253
Alignment:
| Q |
126 |
tattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt |
175 |
Q |
| |
|
||||||||||||||||||| ||||| ||| ||||||||| | |||||||| |
|
|
| T |
22482204 |
tattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgctt |
22482253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 6442 - 6642
Alignment:
| Q |
9 |
atgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcc |
108 |
Q |
| |
|
||||||||||| ||||||||||| ||||| | | |||||||||||||||| | ||| ||||||||| |||||| ||||| |||| |||||| |||| || |
|
|
| T |
6442 |
atgtcctgaatctcagatgctatctgatgctgagaaatcaaagttttgattaggcttacaatcttgcagactaatgatccgcatccaggagggttggccc |
6541 |
T |
|
| Q |
109 |
tatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgttagtctctgc |
208 |
Q |
| |
|
|||| || |||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
6542 |
tatggatcagccgaaggtattcatcaataacatcttcaatgcgaaatgatgcttccctcatatgcttcacccaagttcttattccatcattagtgtctgc |
6641 |
T |
|
| Q |
209 |
t |
209 |
Q |
| |
|
| |
|
|
| T |
6642 |
t |
6642 |
T |
|
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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 49386835 - 49386889
Alignment:
| Q |
131 |
atcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagtt |
185 |
Q |
| |
|
|||||| |||||||| |||||||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
49386835 |
atcaatcacatcttctatgcgaaaagatgcttctctaagctacttcacccaagtt |
49386889 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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