View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_high_3 (Length: 521)
Name: NF7711_high_3
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 520
Target Start/End: Original strand, 9363500 - 9364003
Alignment:
| Q |
18 |
aaagtagtaataactaataagcatatatgtgcagtttgatgagtgtaaaaggttgtactcgcatcaaaattcggatagctcaaagcagaatgttgagaac |
117 |
Q |
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| T |
9363500 |
aaagtagtaataactaataagcatatatgtgcagtttgatgagagtaaaaggttgaactcgcatcaaaattcggatagctcaaagcagaatgttgagaac |
9363599 |
T |
|
| Q |
118 |
tcagacaaagtaaagattgtgttagaagaaaaggaagaagaacaagctggtgtggttgaacctgttcaaaatgcaagaaggtcaactagaatcaaaactc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9363600 |
tcagacaaagtaaagattgtgttagaagaaaaggaagaagaagaagctggtgtggttgaacctgttcaaaatgcaagaaggtcaactagaatcaaaactc |
9363699 |
T |
|
| Q |
218 |
aattagggaggttgaatgagtatggtatatttcttggtctagaagttgatgaagaaggtaatcttataaaagacgctatgcttgctgaatcagaaccact |
317 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9363700 |
aattagggaggttgaatgagtatgatatatttcttggtctagaagtcgatgaagaaggtaatcttataaaagacgctatgcttgcttaatcagaaccact |
9363799 |
T |
|
| Q |
318 |
tgatttgaatcaagcaacgaaggattcaaactagttagctgctatgaaagaggagctgaaagctatagagagnnnnnnn-cacctgggagcttgttagca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9363800 |
tgatttgaatcaagcaacgaaggattcaaactagttagctgctatgaaagaggagctgaaagctatagagagaaaaaaaacacctgggagcttgttagca |
9363899 |
T |
|
| Q |
417 |
tatccgataagagagctataaatgttaaatgagtctatacacttttccgacttgcaaaatcaggtaattttatgtttgtatgtagatgtccatctcattg |
516 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| | ||||||| |
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| T |
9363900 |
tatccgataagagatctataaatgttaaatgagtctatacacttttccgacttgcaaaatcaggtcattttatgcttgtatgtagatgacttgctcattg |
9363999 |
T |
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| Q |
517 |
cagg |
520 |
Q |
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|||| |
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| T |
9364000 |
cagg |
9364003 |
T |
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