View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7711_high_8 (Length: 381)
Name: NF7711_high_8
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 1623237 - 1622974
Alignment:
| Q |
1 |
catcaacaacaaatagagtaaaatggcctggttatcatgtgataacaaaccgaaaggaagcatcaaagtttacggttgctggactccttgctggaccaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1623237 |
catcaacaacaaatagagtaaaatggcctggttatcatgtgataacaaaccgaaaggaagcatcaaagtttacggttgctggactccttgctggaccaac |
1623138 |
T |
|
| Q |
101 |
gtggttggctacaactattgtgccatttacatctggtctttgatcatttatgttgtgctatagctatttctttactacctccgttattgtacttaattct |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1623137 |
atggttggctacaactaccgtgccatttacatctggtctttgatcatttatgttgtgctatagctatttctttactacctccgttattgtacttaattct |
1623038 |
T |
|
| Q |
201 |
ttgtaattaagttcattgtaattattgtaagagcatgctcatattcttttgtacactttgagag |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1623037 |
ttgtaattaagttcattgtaattattgtaagagcatgctcatattcttttgtacactttgagag |
1622974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 1606115 - 1605859
Alignment:
| Q |
1 |
catcaacaacaaatagagtaaaatggcctggttatcatgtgataacaaaccgaaaggaagcatcaaagtttacggttgctggactccttgctggaccaac |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606115 |
catcaacagcaaatagagtaaaatggcctggttatcatgtgatatcaaaccctaatgaagcatcaaagtttacggttgctggactccttgctggaccaac |
1606016 |
T |
|
| Q |
101 |
gtggttggctacaactattgtgccatttacatctggtctttgatcatttatgttgtgctatagctatttctttactacctccgttattgtacttaattct |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| |||||||||||||||||| |
|
|
| T |
1606015 |
atggttggctacaactactgtgccatttacatctggtctttgatcatttatgttgtgctatagctatttcttcattgcctcagttattgtacttaattct |
1605916 |
T |
|
| Q |
201 |
ttgtaattaagttcattgtaattattgtaagagcatgctcatattcttttgtacact |
257 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1605915 |
ttgtaattaagttcattgtaattcttgtaagagcatgctcatattcttttgtacact |
1605859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 1629413 - 1629247
Alignment:
| Q |
1 |
catcaacaacaaatagagtaaaatggcctggttatcatgtgataacaaaccgaaaggaagcatcaaagtttacggttgctggactccttgctggaccaac |
100 |
Q |
| |
|
|||||||| ||||||| || |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1629413 |
catcaacagcaaatagggtgaaatggcctggttatcatgtgatatcaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggaccaac |
1629314 |
T |
|
| Q |
101 |
gtggttggctacaactattgtgccatttacatctggtctttgatcatttatgttgtgctatagctat |
167 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| | || || ||||||||| |
|
|
| T |
1629313 |
atggttggctacaactactgtgccatttacatctggtctttgatcatttgtattttggtatagctat |
1629247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 10821285 - 10821433
Alignment:
| Q |
1 |
catcaacaacaaatagagtaaaatggcctggttatcatgtgataacaaaccgaaaggaagcatcaaagtttacggttgctggactccttgctggaccaac |
100 |
Q |
| |
|
||||||||||||| || ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10821285 |
catcaacaacaaacagggtaaattggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggtccaac |
10821384 |
T |
|
| Q |
101 |
gtggttggctacaactattgtgccatttacatctggtctttgatcattt |
149 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10821385 |
atggttggctaaaactactgtgccatttacatctggtctttgatcattt |
10821433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 1622912 - 1622866
Alignment:
| Q |
326 |
cgttgtacaatcatacattgagtttgagaggagctattaagaataat |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1622912 |
cgttgtacaatcatacattgagtttgagaggagctattaagaataat |
1622866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 18780931 - 18780677
Alignment:
| Q |
1 |
catcaacaacaaatagagtaaaatggcctggttatcatgtgataacaaaccgaaaggaagcatcaaagtttacggttgctggactccttgctggaccaac |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
18780931 |
catcaacagcaaatagagtaaaatggcctggttatcatgcgataacaaaccctaaggaagcatcaaagtttacggttgctggactcattactggaccaac |
18780832 |
T |
|
| Q |
101 |
gtggttggctacaactattgtgccatttacatctggtctttgatcatttatgttgtgctatagctatttctttactacctccgttattgtacttaattct |
200 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | | | || ||||||||||||||||| |
|
|
| T |
18780831 |
atggctggctacaactactgtgccatttacatctggtctttgatcttttatgttgtgctatagctatttcttcattgcttcaattattgtacttaattct |
18780732 |
T |
|
| Q |
201 |
ttgtaattaagttcattgtaattattgtaagagcatgctcatattcttttgtaca |
255 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||| | |||||||||||||||| |
|
|
| T |
18780731 |
ttgtaattaaattcattgtaattcttgtaagagcatacccatattcttttgtaca |
18780677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 18780607 - 18780565
Alignment:
| Q |
326 |
cgttgtacaatcatacattgagtttgagaggagctattaagaa |
368 |
Q |
| |
|
|||||||||||||||| ||||||||||| | |||||||||||| |
|
|
| T |
18780607 |
cgttgtacaatcataccttgagtttgagggaagctattaagaa |
18780565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12802497 - 12802458
Alignment:
| Q |
1 |
catcaacaacaaatagagtaaaatggcctggttatcatgt |
40 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
12802497 |
catcaacaagaaatagagtaagatggcctggttatcatgt |
12802458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University