View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_1 (Length: 776)
Name: NF7711_low_1
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 516; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 19 - 546
Target Start/End: Original strand, 31641140 - 31641667
Alignment:
| Q |
19 |
aatatacccatggtaattttggtctctaacagttcccccacgactcaggaacagttgttgtcccaagaaaaccaaaacctgcttgttgtgactgtgactt |
118 |
Q |
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| T |
31641140 |
aatatacccatggtaattttggtgtctaacagttcccccacgactcaggaacagttgttgtcccaagaaaaccaaaacctgcttgttgtgactgtgactt |
31641239 |
T |
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| Q |
119 |
gagcatcatcatgttttgatgaggttggtgttggtggtattctacaccccccgtgaatgttagcatatcctttacatccaaggagtcaccaccatttcct |
218 |
Q |
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| T |
31641240 |
gagcatcatcatgttttgatgaggttggtgttggtggtattctacaccccccgtgaatgttagcatatcctttacatccaaggagtcaccaccatttcct |
31641339 |
T |
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| Q |
219 |
ccaccgttggtaaggccaagaaagtccctagtgagaccatcgtcgttctttccggtgagacagcctctcatgttgttaatgtagtgatcaactgagtcta |
318 |
Q |
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| T |
31641340 |
ccaccgttggtaaggccaagaaagtccctagtgagaccatcgtcgttctttccggtgagacagcctctcatgttgttaatgtagtgatcaactgagtcta |
31641439 |
T |
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| Q |
319 |
gctgagtcactgatccaaactggccaatgctgagctgagaagtttgatggtgactcattgttggttggcttcctgtgatggcggccgcaccgacggttgc |
418 |
Q |
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| T |
31641440 |
gctgagtcactgatccaaactggccaatgctgagctgagaggtttgatggtgactcattgttggttggcttcctgtgatggcggccgcaccgacggttgc |
31641539 |
T |
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| Q |
419 |
tgctttttggagaagtgcagttgctgagaggtgtggtgacatggcagcactggaagaaggttgttgtgtgctgacgtggaagggtgatgatgtcattatg |
518 |
Q |
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| T |
31641540 |
tgctttttggagaagtgcagttgctgagaggtgtggtgacatggcagcagtggaagaaggttgttgtgtgctgacgtggaagggtgatgatgtcattatg |
31641639 |
T |
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| Q |
519 |
ctcttagggtttgtgtgatgaagaaatg |
546 |
Q |
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| T |
31641640 |
ctcttagggtttgtgtgatgaagaaatg |
31641667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 573 - 758
Target Start/End: Original strand, 31641691 - 31641876
Alignment:
| Q |
573 |
ttggtgtgaaaatttggagattcaggcttgatgttgtggtggagagtattattaaggttgctagggttagggttttgttgaggtgggtcccaggtgatgt |
672 |
Q |
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| T |
31641691 |
ttggtgtgaaaatttggagattcaggcttgatgttgtggtggagagtattattaaggttgctagggttagggttttgttgaggtgggtcccaggtgatgt |
31641790 |
T |
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| Q |
673 |
ggctttgtgggttttggaaactttgttgttgatttgggaagaggaaaagagattggactaatgggtttgtgtttgtggtggtgatg |
758 |
Q |
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| T |
31641791 |
ggctttgtgggttttggaaactttgttgttgatttgggaagaggaaaagagattggactaatgggtttgtgtttgtggtggtgatg |
31641876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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