View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_11 (Length: 504)
Name: NF7711_low_11
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 14 - 490
Target Start/End: Complemental strand, 48543359 - 48542895
Alignment:
| Q |
14 |
catcaggtttgttatctgaatatcatccatgtatgttgcaagtctatgtttagataattactgctatctttttacggttttcgtttctctttttcttggc |
113 |
Q |
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| T |
48543359 |
catcaggtttgttatctgaatatcatccatgtatgttgcaagtctatgtttagataattactgctatctttttacggttttcgtttctctttttcttggc |
48543260 |
T |
|
| Q |
114 |
aaatgttagttgattagtttagtttgttgcagccctcaaaagtagagataatttgttaatggtagggatcaaacctccttcttcagcttcacaacctata |
213 |
Q |
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| T |
48543259 |
aaatgttagt------gattagtttgttgcagccctcaaaagtagagataatttgttaatggtagggatcaaacctccttcttcagcttcacaacctata |
48543166 |
T |
|
| Q |
214 |
ccacttgagagatttaaaaagtggtatattttagttctatataacaagttaatcacaattgaaaccaaggagatcataatagaatacaaatgttccatta |
313 |
Q |
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| T |
48543165 |
ccacttgagagatttaaaaagtggtatattttagttctatataacaagttaatcacaattgaaaccaaggagatcataatagaatacaaatgttccatta |
48543066 |
T |
|
| Q |
314 |
aaccaaaggacattcttgtccttgtacaagaaatacagtaaaactagaaaaatttgatttatcatgtctacaacatgatgactaattcttaaaaattaaa |
413 |
Q |
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| T |
48543065 |
aaccaaaggacattcttgtccttgtacaagaaatacagt-aaactagaaaaatttgattaatcatgtctacaacatgatgactaattcttaa-----aaa |
48542972 |
T |
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| Q |
414 |
tcaaatttgttttgcagtgtcacaatggacataccctttgttcaaattgtaagacaagggtacacaacagatgtcca |
490 |
Q |
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| T |
48542971 |
tcaaatttgttttgcagtgtcacaatggacataccctttgttcaaattgtaagacaagggtacacaacagatgtcca |
48542895 |
T |
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Back To:
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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 423 - 483
Target Start/End: Original strand, 9836248 - 9836308
Alignment:
| Q |
423 |
ttttgcagtgtcacaatggacataccctttgttcaaattgtaagacaagggtacacaacag |
483 |
Q |
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||||||||||||||||||| |||||||| ||||||| ||||||||| |||||||||||||| |
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| T |
9836248 |
ttttgcagtgtcacaatgggcataccctatgttcaacttgtaagactagggtacacaacag |
9836308 |
T |
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