View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7711_low_12 (Length: 499)

Name: NF7711_low_12
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7711_low_12
NF7711_low_12
[»] chr4 (1 HSPs)
chr4 (19-486)||(38877319-38877786)
[»] chr8 (19 HSPs)
chr8 (222-361)||(16616938-16617077)
chr8 (369-499)||(16791575-16791705)
chr8 (229-351)||(16628648-16628770)
chr8 (229-351)||(16637529-16637651)
chr8 (369-499)||(16790169-16790299)
chr8 (359-497)||(16616778-16616916)
chr8 (360-499)||(16792415-16792554)
chr8 (359-468)||(16628507-16628616)
chr8 (359-468)||(16637388-16637497)
chr8 (360-486)||(16790515-16790642)
chr8 (226-343)||(16790682-16790799)
chr8 (226-343)||(16792594-16792711)
chr8 (21-70)||(16617258-16617307)
chr8 (22-64)||(15110407-15110449)
chr8 (125-170)||(16617143-16617188)
chr8 (23-64)||(16790986-16791027)
chr8 (281-352)||(16791464-16791534)
chr8 (286-352)||(16790062-16790128)
chr8 (21-62)||(16792900-16792941)


Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Complemental strand, 38877786 - 38877319
Alignment:
Q  19 actcccacaggatggaaaatgcctcacagctttgttgcaaccacctatgatattcccatgcatgatgctttcaatcagttcgctgactctgcagaagctg 118  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38877786 actcccacagcatggaaaatgcctcacagctttgttgcaaccacctatgatattcccatgcatgatgctttcaatcagttcgctgactctgcagaagctg 38877687  T
Q  119 acttgaattcatccacaatgaaaggaaaatgccctcaaactgtggtaatcttannnnnnnnnctcgccattcaaatctactagaagagtataccgttatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||          |   ||||||||||||||||||||||||||||||||||    
T  38877686 acttgaattcatccacaatgaaaggaaaatgccctcaaactgtggtaatctttttttttcttcctaccattcaaatctactagaagagtataccgttatc 38877587  T
Q  219 ttgttacaagaattttactgacacgttgttaactctagcagaaaaatcagaacattttagcagaaataaaagacataaacaatcaattgttcgactttaa 318  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  38877586 ttgttacaagaattttactgacacattgttaactctagcagaaaaatcagaacattttagcagaaataaaagacataaacaatcaattgttcgactgtga 38877487  T
Q  319 ggtggttatcgctgaacaggaaaatgttgaaagtacagttggattacttcttaaaatcatgtacagtgcagtgactatgaatcaggaccttgtatctcac 418  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38877486 ggtggttatcgctgaacaggaaaatgttgaaagtgcagttggattacttcttaaaatcatgtacaatgcagtgactatgaatcaggaccttgtatctcac 38877387  T
Q  419 ttgacatatgataaaaaggtgaatgattttatatgctgttttgaactattcacattaattattttgat 486  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  38877386 ttgacatatgataaaaaggtgaatggttttatattctgttttgaactattcacattaattattttgat 38877319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 222 - 361
Target Start/End: Complemental strand, 16617077 - 16616938
Alignment:
Q  222 ttacaagaattttactgacacgttgttaactctagcagaaaaatcagaacattttagcagaaataaaagacataaacaatcaattgttcgactttaaggt 321  Q
    ||||||||||||||||| ||| ||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||| ||||||||||  | ||||    
T  16617077 ttacaagaattttactgtcacattgttaactgtagcaggaaaatcagaatattttagcagaaataaaagacattaacaatcgattgttcgacagtgaggt 16616978  T
Q  322 ggttatcgctgaacaggaaaatgttgaaagtacagttgga 361  Q
    |||||||||| || |||||| ||||||||||  |||||||    
T  16616977 ggttatcgctaaaaaggaaattgttgaaagtgtagttgga 16616938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 369 - 499
Target Start/End: Original strand, 16791575 - 16791705
Alignment:
Q  369 ttaaaatcatgtacagtgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaaggtgaatgattttatatgctgttttgaactatt 468  Q
    ||||||||||||||| |||||||||||| |||||| ||| |||||||||||| || |||||||||||||| | ||||||||||| || |||| |||||||    
T  16791575 ttaaaatcatgtacaatgcagtgactatcaatcagaaccatgtatctcacttcacttatgataaaaaggtaagtgattttatattctattttcaactatt 16791674  T
Q  469 cacattaattattttgatgtccatctcattg 499  Q
      |||| ||||||||||| | ||||||||||    
T  16791675 tgcattgattattttgattttcatctcattg 16791705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 229 - 351
Target Start/End: Complemental strand, 16628770 - 16628648
Alignment:
Q  229 aattttactgacacgttgttaactctagcagaaaaatcagaacattttagcagaaataaaagacataaacaatcaattgttcgactttaaggtggttatc 328  Q
    ||||||| || ||| ||||| |||||||||| ||| ||||||  ||||||||||||||||||||||||| |||| |||||| |||| | |||||||||||    
T  16628770 aattttattgtcacattgttgactctagcaggaaattcagaatgttttagcagaaataaaagacataaataatcgattgtttgactgtgaggtggttatc 16628671  T
Q  329 gctgaacaggaaaatgttgaaag 351  Q
    | |||| ||||||||||||||||    
T  16628670 ggtgaaaaggaaaatgttgaaag 16628648  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 229 - 351
Target Start/End: Complemental strand, 16637651 - 16637529
Alignment:
Q  229 aattttactgacacgttgttaactctagcagaaaaatcagaacattttagcagaaataaaagacataaacaatcaattgttcgactttaaggtggttatc 328  Q
    ||||||| || ||| ||||| |||||||||| ||| ||||||  ||||||||||||||||||||||||| |||| |||||| |||| | |||||||||||    
T  16637651 aattttattgtcacattgttgactctagcaggaaattcagaatgttttagcagaaataaaagacataaataatcgattgtttgactgtgaggtggttatc 16637552  T
Q  329 gctgaacaggaaaatgttgaaag 351  Q
    | |||| ||||||||||||||||    
T  16637551 ggtgaaaaggaaaatgttgaaag 16637529  T

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Target: chr8; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 369 - 499
Target Start/End: Original strand, 16790169 - 16790299
Alignment:
Q  369 ttaaaatcatgtacagtgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaaggtgaatgattttatatgctgttttgaactatt 468  Q
    ||||||||||||||| ||||||||||||  ||||| |||||||||||||||| || |||||||||||||| |||| |||||||| || |||| |||||||    
T  16790169 ttaaaatcatgtacaatgcagtgactatcgatcagaaccttgtatctcacttcacttatgataaaaaggtaaatggttttatattctattttcaactatt 16790268  T
Q  469 cacattaattattttgatgtccatctcattg 499  Q
      |||| | ||||||||| | ||||||||||    
T  16790269 tgcattgaatattttgattttcatctcattg 16790299  T

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Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 497
Target Start/End: Complemental strand, 16616916 - 16616778
Alignment:
Q  359 ggattacttcttaaaatcatgtacagtgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaaggtgaatgattttatatgctgtt 458  Q
    ||||||||| | ||||| ||||||| ||||||| |||| |||||  |||||||||||||||| || | |||||||||||| ||||||||||||| |||||    
T  16616916 ggattacttgtgaaaattatgtacaatgcagtgtctatcaatcaaaaccttgtatctcactttacttctgataaaaaggtaaatgattttatattctgtt 16616817  T
Q  459 ttgaactattcacattaattattttgatgtccatctcat 497  Q
    ||||| ||||  |||| |  |||||||| | ||||||||    
T  16616816 ttgaattatttgcattgaccattttgattttcatctcat 16616778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 499
Target Start/End: Complemental strand, 16792554 - 16792415
Alignment:
Q  360 gattacttcttaaaatcatgtacagtgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaaggtgaatgattttatatgctgttt 459  Q
    |||||||| ||||||||||||||| |||| ||||||| |||||   || |||||||||||| |  | ||||||||| || |||||||||||||  |||||    
T  16792554 gattacttgttaaaatcatgtacattgcaatgactatcaatcaaagccatgtatctcacttcatttctgataaaaatgtaaatgattttatattatgttt 16792455  T
Q  460 tgaactattcacattaattattttgatgtccatctcattg 499  Q
    | || |||||||||| ||||||||||| | ||| ||||||    
T  16792454 tcaattattcacattgattattttgattttcatttcattg 16792415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 468
Target Start/End: Complemental strand, 16628616 - 16628507
Alignment:
Q  359 ggattacttcttaaaatcatgtacagtgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaaggtgaatgattttatatgctgtt 458  Q
    ||||||||| ||||||||||||||| ||||||||| || |||||  |||||||||||||||| || |  ||||||||||| |||| |||||||| |||||    
T  16628616 ggattacttgttaaaatcatgtacaatgcagtgaccatcaatcaaaaccttgtatctcacttcacttccgataaaaaggtaaatgtttttatattctgtt 16628517  T
Q  459 ttgaactatt 468  Q
    | ||| ||||    
T  16628516 tggaattatt 16628507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 468
Target Start/End: Complemental strand, 16637497 - 16637388
Alignment:
Q  359 ggattacttcttaaaatcatgtacagtgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaaggtgaatgattttatatgctgtt 458  Q
    ||||||||| ||||||||||||||| ||||||||| || |||||  |||||||||||||||| || |  ||||||||||| |||| |||||||| |||||    
T  16637497 ggattacttgttaaaatcatgtacaatgcagtgaccatcaatcaaaaccttgtatctcacttcacttccgataaaaaggtaaatgtttttatattctgtt 16637398  T
Q  459 ttgaactatt 468  Q
    | ||| ||||    
T  16637397 tggaattatt 16637388  T

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Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 486
Target Start/End: Complemental strand, 16790642 - 16790515
Alignment:
Q  360 gattacttcttaaaatcatgtacagtgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaag-gtgaatgattttatatgctgtt 458  Q
    |||||||| ||||||||||||||| |||| ||||||| |||||   || ||||||||| || || | |||||||||  || |||||||||||||  | ||    
T  16790642 gattacttgttaaaatcatgtacaatgcaatgactatcaatcaaagccatgtatctcatttcacttctgataaaaaatgtaaatgattttatattatctt 16790543  T
Q  459 ttgaactattcacattaattattttgat 486  Q
    |||||||||||||||| |||||||||||    
T  16790542 ttgaactattcacattgattattttgat 16790515  T

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Target: chr8; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 226 - 343
Target Start/End: Complemental strand, 16790799 - 16790682
Alignment:
Q  226 aagaattttactgacacgttgttaactctagcagaaaaatcagaacattttagcagaaataaaagacataaacaatcaattgttcgactttaaggtggtt 325  Q
    ||||| ||| ||| ||| |||||||||||| ||  ||||||||||  |||||||| |||||| ||||||||||||||||||||| |||  | ||||||||    
T  16790799 aagaactttcctgtcacattgttaactctatcattaaaatcagaatcttttagcaaaaataatagacataaacaatcaattgtttgacaatgaggtggtt 16790700  T
Q  326 atcgctgaacaggaaaat 343  Q
    |||| ||||  |||||||    
T  16790699 atcgttgaaagggaaaat 16790682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 226 - 343
Target Start/End: Complemental strand, 16792711 - 16792594
Alignment:
Q  226 aagaattttactgacacgttgttaactctagcagaaaaatcagaacattttagcagaaataaaagacataaacaatcaattgttcgactttaaggtggtt 325  Q
    ||||| |||| || ||| |||||||||||| ||  ||||||||||  |||||||| | |||| ||||||||||||||||||||| |||  | ||||||||    
T  16792711 aagaactttaatgtcacattgttaactctaacatgaaaatcagaatcttttagcaaatataatagacataaacaatcaattgtttgacaatgaggtggtt 16792612  T
Q  326 atcgctgaacaggaaaat 343  Q
    |||| |||| ||||||||    
T  16792611 atcgttgaaaaggaaaat 16792594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 16617307 - 16617258
Alignment:
Q  21 tcccacaggatggaaaatgcctcacagctttgttgcaaccacctatgata 70  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  16617307 tcccacaggatggaaaatgcctcgcagctttgttgcaaccacctttgata 16617258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 15110407 - 15110449
Alignment:
Q  22 cccacaggatggaaaatgcctcacagctttgttgcaaccacct 64  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  15110407 cccacaggatggaaaatgcatcgcagctttgttgcaaccacct 15110449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 16617188 - 16617143
Alignment:
Q  125 attcatccacaatgaaaggaaaatgccctcaaactgtggtaatctt 170  Q
    |||||| ||||||||||||||||||||||| | |||||||||||||    
T  16617188 attcattcacaatgaaaggaaaatgccctccagctgtggtaatctt 16617143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 16791027 - 16790986
Alignment:
Q  23 ccacaggatggaaaatgcctcacagctttgttgcaaccacct 64  Q
    ||||||||| ||||||||||| ||||||||||||||||||||    
T  16791027 ccacaggatagaaaatgcctcgcagctttgttgcaaccacct 16790986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 16791464 - 16791534
Alignment:
Q  281 gaaataaaagacataaacaatcaattgttcgactttaaggtggttatcgctgaacaggaaaatgttgaaagt 352  Q
    ||||||||| |||||||||||| ||| | ||||| | || |||||||||||||| |||||||| ||||||||    
T  16791464 gaaataaaaaacataaacaatcgattct-cgactatgagatggttatcgctgaaaaggaaaatattgaaagt 16791534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 16790062 - 16790128
Alignment:
Q  286 aaaagacataaacaatcaattgttcgactttaaggtggttatcgctgaacaggaaaatgttgaaagt 352  Q
    |||| |||||||| ||| |||||| |||| | || ||||||| |||||| |||||||||||||||||    
T  16790062 aaaaaacataaacgatcgattgtttgactatgagatggttattgctgaaaaggaaaatgttgaaagt 16790128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 16792941 - 16792900
Alignment:
Q  21 tcccacaggatggaaaatgcctcacagctttgttgcaaccac 62  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||    
T  16792941 tcccacaggatggaaaaagcctcgcagcttttttgcaaccac 16792900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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