View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_13 (Length: 497)
Name: NF7711_low_13
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 19 - 487
Target Start/End: Complemental strand, 27761420 - 27760939
Alignment:
| Q |
19 |
caaagtacaccaatttttcatgatatatattcacatatctattaagttactataacatagattaaatccaacaattaaa------actaactggtttatt |
112 |
Q |
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| T |
27761420 |
caaagtacaccaaattttcatgatatatattcacatatttataagtttactataacataaattaaatccaagaattaaacttaaaactaactggtttatt |
27761321 |
T |
|
| Q |
113 |
tcacaatttctaatgtggtcttttatcttacttcattggatgtataaaaaacatttttataaacaatttcgatgtgatcttttgtgcatataggctttct |
212 |
Q |
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| T |
27761320 |
tcacaatttctaatgtggtcttttctctaacttcattggatgtataaaaaacatttgtataaacaatttttatgtgatcttttgtgcatatatgctctct |
27761221 |
T |
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| Q |
213 |
acctcgttatgcatgatttttaatatnnnnnnnntgaagatatcacaaacaccagaatttagcattgtgtgatgatgaggacatacgaaaggacagaaat |
312 |
Q |
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| T |
27761220 |
acctcgttatgcatgatttttaatataaaaaaaatgaagatatcacaaacaccagaatttagcattatgtgacgatgaggacacataaaaggacagaaat |
27761121 |
T |
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| Q |
313 |
ggagctaggaccatggtccaatcgaccagactctgccagattaaccatgtgaatgtacgtaagccaccccttcttgaaaaagcacatagcatgcaggtcc |
412 |
Q |
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| T |
27761120 |
ggagctaggaccatggtccaatctgtcagattctgctggattaaccatgtgaatgtatgtaagctatcccttcttgaaaaagcacatagcatgcaggtcc |
27761021 |
T |
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| Q |
413 |
tcatcacctcagctatatact-------cagatccccataattcatttttcatcatttcttttcaccttctttctgatgtcc |
487 |
Q |
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| T |
27761020 |
tcatcacttcagctatatactcagaattcagatccccataattcatttttcatcctttcttttcaccttctttctgttgtcc |
27760939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 249 - 487
Target Start/End: Complemental strand, 45315242 - 45315005
Alignment:
| Q |
249 |
aagatatcacaaacaccagaatttagcattgtgtgatgatgaggacatacgaaaggacagaaatggagctaggaccatggtccaatcgaccagactctgc |
348 |
Q |
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| T |
45315242 |
aagatatcacaaacaccagaatttagcattatgtgacgatgaggacatacgaaaggacagaaatggagctaggaccatggtccaatcgaccagactctgc |
45315143 |
T |
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| Q |
349 |
cagattaaccatgtgaatgtacgtaagccaccccttcttgaaaaagcacatagcatgcaggtcctcatcacctcagctatatactcagatccccataatt |
448 |
Q |
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| T |
45315142 |
cggattaac-atgtgaatgtatgtaagccaccccttcttgaaaaagcacatagcatgcaggtcctcatcacctcagctatatactcagatccccataatt |
45315044 |
T |
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| Q |
449 |
catttttcatcatttcttttcaccttctttctgatgtcc |
487 |
Q |
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| T |
45315043 |
catttttcatcatttcttttcaccttctttctgttgtcc |
45315005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 45315798 - 45315579
Alignment:
| Q |
19 |
caaagtacaccaatttttcatgatatatattcacatatctattaagttactataacatagattaaatccaacaattaaaactaactggtttatttcacaa |
118 |
Q |
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| T |
45315798 |
caaagtataccaatttttcatgatatatattcacatatctattaagttactataacatagattaaatccaacaattaaaactaactggtttatttcacaa |
45315699 |
T |
|
| Q |
119 |
tttctaatgtggtcttttatcttacttcattggatgtataaaaaacatttttataaacaatttcgatgtgatcttttgtgcatataggctttctacctcg |
218 |
Q |
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| T |
45315698 |
tttctaatgtggacttttatcttacttcattgggtgtataaaaaacatttttataaacaatttctatgtgatcttttgtgcatatatgctttctacctcg |
45315599 |
T |
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| Q |
219 |
ttatgcatgatttttaatat |
238 |
Q |
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|||||||||||||||||||| |
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| T |
45315598 |
ttatgcatgatttttaatat |
45315579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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