View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7711_low_14 (Length: 493)
Name: NF7711_low_14
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_14 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 4191718 - 4192192
Alignment:
| Q |
1 |
gtgagcttttgtttcctttcaatcagagtttatttattacgattaggataaggtttcttctaatcattcaaagctattaaattttaatcaaacaacactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
4191718 |
gtgagcttttgtttcctttcaatcagagtttatctattacgattacgataagctttcttctaatcattcaaagctaagaaattttaatcaaacaacactt |
4191817 |
T |
|
| Q |
101 |
cctttatctcgtatggctttcaacaacaacaatatcaaaactcataaacacatcaatgttgttcctccaatcatcaacacaaaccacaacattccctctc |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
4191818 |
cctttatctcgtatggctttcaataacaacaatatcaaaactcatgaacacatcaatgttgttcctccaatcatcaacacaaacgacaacattccctctc |
4191917 |
T |
|
| Q |
201 |
actttcttcgacatattatggctaaaggtatatccagtggaacgtgttttcttctacaccctcccaagttcacaatcacacccttctttcttcttccaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4191918 |
actttcttcgacatattatggctaaaggtatatccagtggaacgtgttttcttctacaccctcccaagttcacaatcacacccttctttcttcttccaaa |
4192017 |
T |
|
| Q |
301 |
agcttgttacaattctcaaatcttcactctctttaaccctcaaacactttctccctttagctggtaagataatttggccttccgagtctcaacaaccaat |
400 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4192018 |
agcttgttacaattctcaaatcttcaccctctttaaccctcaaacactttctccctttagctggtaagataatttggccttccgagtctcaacaaccaat |
4192117 |
T |
|
| Q |
401 |
aatccaatatacaccaaatgatggtgtttccttgctaattgcagagtctaacgttgatttcgatcaagtcgttga |
475 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
4192118 |
aatcctatatacaccaaatgatggtgtctccttgctaattgcagagtctaaagttgatttcgatcaagtcgttga |
4192192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 121 - 448
Target Start/End: Original strand, 4233337 - 4233663
Alignment:
| Q |
121 |
caacaacaacaatatcaaaactcataaacacatcaatgttgttcctccaatcatcaacacaaaccacaacattccctctcactttcttcgacatattatg |
220 |
Q |
| |
|
|||||||||||| | |||| ||| |||||| ||| ||| |||||||| |||||||| |||| |||||| |||||| |||| ||| |||||||| || |
|
|
| T |
4233337 |
caacaacaacaacgttaaaatccatgaacacaccaaagtttttcctcca-tcatcaactcaaaaaacaacaacccctcttacttactttgacatattttg |
4233435 |
T |
|
| Q |
221 |
gctaaaggtatatccagtggaacgtgttttcttctacaccctcccaagttcacaatcacacccttctttcttcttccaaaagcttgttacaattctcaaa |
320 |
Q |
| |
|
||||| | | ||||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||| | ||||||||| ||||||||||| |
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|
| T |
4233436 |
gctaaggttccatccagtagaacgtgttttcttctacgccctcccaaattcacattcacacccttctttcttcttcaagaagcttgttccaattctcaaa |
4233535 |
T |
|
| Q |
321 |
tcttcactctctttaaccctcaaacactttctccctttagctggtaagataatttggccttccgagtctcaacaaccaataatccaatatacaccaaatg |
420 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||| || |||||| ||||||||||||||||||| ||||||| |
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|
| T |
4233536 |
tcttcactctctttaaccctcaaggactttctccctttagctggtaacatcgtttggcctttagaatctcaagaaccaataatccaatatactccaaatg |
4233635 |
T |
|
| Q |
421 |
atggtgtttccttgctaattgcagagtc |
448 |
Q |
| |
|
|||| ||||||||| | ||||||||||| |
|
|
| T |
4233636 |
atggagtttccttgatcattgcagagtc |
4233663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 113 - 449
Target Start/End: Original strand, 4188691 - 4189026
Alignment:
| Q |
113 |
atggctttcaacaacaacaatatcaaaactcataaacacatcaatgttgttcctccaatcatcaacacaaaccacaacattccctctcactttcttcgac |
212 |
Q |
| |
|
||||| || ||||| ||||||||||||| ||| ||||| |||| ||||||||| || |||||||| ||||| |||||| | ||| |||||||||||||| |
|
|
| T |
4188691 |
atggcatttaacaagaacaatatcaaaatccatgaacacttcaaagttgttccttca-tcatcaacccaaactacaacaattcctttcactttcttcgac |
4188789 |
T |
|
| Q |
213 |
atattatggctaaaggtatatccagtggaacgtgttttcttctacaccctcccaagttcacaatcacacccttctttcttcttccaaaagcttgttacaa |
312 |
Q |
| |
|
||||| ||| ||||| | |||| | ||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| || ||| ||| |
|
|
| T |
4188790 |
atattttggataaagttccatcctatagaacgaatcttcttttacaccctcccaaattcacaatcacacccttctttcttctttcaaaaactagttccaa |
4188889 |
T |
|
| Q |
313 |
ttctcaaatcttcactctctttaaccctcaaacactttctccctttagctggtaagataatttggccttccgagtctcaacaaccaataatccaatatac |
412 |
Q |
| |
|
|||||| ||| |||||||||||||||||| ||||||||||||||||||||||||| || ||||||| || || ||||||||||||| |||||| || || |
|
|
| T |
4188890 |
ttctcagatcatcactctctttaaccctccaacactttctccctttagctggtaaaattgtttggccatcagaatctcaacaaccaaaaatccagtacac |
4188989 |
T |
|
| Q |
413 |
accaaatgatggtgtttccttgctaattgcagagtct |
449 |
Q |
| |
|
| |||||||||||||||| ||||| |||||||||||| |
|
|
| T |
4188990 |
aacaaatgatggtgtttcattgctcattgcagagtct |
4189026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 153 - 382
Target Start/End: Original strand, 4250397 - 4250625
Alignment:
| Q |
153 |
tcaatgttgttcctccaatcatcaacacaaaccacaacattccctctcactttcttcgacatattatggctaaaggtatatccagtggaacgtgttttct |
252 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||||| || ||||||| ||||||||||||||||| ||||||| | | ||||||| ||||| ||||||| |
|
|
| T |
4250397 |
tcaaggttgttcctcca-tcatcaacaaaaaccacctcaatccctcttactttcttcgacatattttggctaaggttccatccagtagaacgagttttct |
4250495 |
T |
|
| Q |
253 |
tctacaccctcccaagttcacaatcacacccttctttcttcttccaaaagcttgttacaattctcaaatcttcactctctttaaccctcaaacactttct |
352 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||| | ||||| ||| ||||||||| |||||||||||||||||| |||| ||||| |
|
|
| T |
4250496 |
tctacaccctcccaaattcacaatcacacccttctttcttctttcaaacgattgttccaaatctcaaatcatcactctctttaaccctccaacattttct |
4250595 |
T |
|
| Q |
353 |
ccctttagctggtaagataatttggccttc |
382 |
Q |
| |
|
||||||||||||||| || |||||||||| |
|
|
| T |
4250596 |
ccctttagctggtaacatcgtttggccttc |
4250625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 170 - 408
Target Start/End: Original strand, 4195636 - 4195874
Alignment:
| Q |
170 |
atcatcaacacaaaccacaacattccctctcactttcttcgacatattatggctaaaggtatatccagtggaacgtgttttcttctacaccctcccaagt |
269 |
Q |
| |
|
||||||||| |||| |||||| |||||| |||| ||| |||||||| ||||| | | | |||| || |||||||||||||||||||||||||||| | |
|
|
| T |
4195636 |
atcatcaacccaaaaaacaacaacccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaat |
4195735 |
T |
|
| Q |
270 |
tcacaatcacacccttctttcttcttccaaaagcttgttacaattctcaaatcttcactctctttaaccctcaaacactttctccctttagctggtaaga |
369 |
Q |
| |
|
||||| |||||| |||||||||| |||||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||| | |
|
|
| T |
4195736 |
tcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggtaaaa |
4195835 |
T |
|
| Q |
370 |
taatttggccttccgagtctcaacaaccaataatccaat |
408 |
Q |
| |
|
| |||||||||| || |||| ||||||| | ||||||| |
|
|
| T |
4195836 |
tcgtttggccttctgattctccacaaccattcatccaat |
4195874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 147 - 449
Target Start/End: Original strand, 4241151 - 4241452
Alignment:
| Q |
147 |
aacacatcaatgttgttcctccaatcatcaacacaaaccacaacattccctctcactttcttcgacatattatggctaaaggtatatccagtggaacgtg |
246 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| ||||| || || || |||||||||| ||||||||||| ||||||| | | ||||| | ||| |
|
|
| T |
4241151 |
aacacatcaaagttgttcctcca-tcatcaaaccaaacaacctcaatctctctcacttttttcgacatattttggctaaggttccatccaatagaataca |
4241249 |
T |
|
| Q |
247 |
ttttcttctacaccctcccaagttcacaatcacacccttctttcttcttccaaaagcttgttacaattctcaaatcttcactctctttaaccctcaaaca |
346 |
Q |
| |
|
| || |||||||||||||||| |||||||||| || |||| |||||||| |||| ||||| ||| ||| ||||||||||| ||||| |||||| |||| |
|
|
| T |
4241250 |
tcttattctacaccctcccaaattcacaatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaaca |
4241349 |
T |
|
| Q |
347 |
ctttctccctttagctggtaagataatttggccttccgagtctcaacaaccaataatccaatatacaccaaatgatggtgtttccttgctaattgcagag |
446 |
Q |
| |
|
|||||| |||||||| ||||| || ||||| || || || ||| | |||| ||| ||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4241350 |
ctttcttcctttagccggtaacatcgtttgggattttgaatcacaaaacccaaaaatacaatacacaccaaatgatggtgtttccttgctcattgcagag |
4241449 |
T |
|
| Q |
447 |
tct |
449 |
Q |
| |
|
||| |
|
|
| T |
4241450 |
tct |
4241452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 240 - 382
Target Start/End: Original strand, 4094858 - 4095000
Alignment:
| Q |
240 |
gaacgtgttttcttctacaccctcccaagttcacaatcacacccttctttcttcttccaaaagcttgttacaattctcaaatcttcactctctttaaccc |
339 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||| |||| |||||| |||| |||||| ||| ||||||||||||||||||||||| | |
|
|
| T |
4094858 |
gaacgtattttcttctacaccctcccaagttcacactcacaccctacttttttcttcgaaaatcttgttccaaaactcaaatcttcactctctttaactc |
4094957 |
T |
|
| Q |
340 |
tcaaacactttctccctttagctggtaagataatttggccttc |
382 |
Q |
| |
|
| ||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
4094958 |
tacaacacttcctccctttagctggtaacatcgtttggccttc |
4095000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 251 - 381
Target Start/End: Original strand, 4102417 - 4102547
Alignment:
| Q |
251 |
cttctacaccctcccaagttcacaatcacacccttctttcttcttccaaaagcttgttacaattctcaaatcttcactctctttaaccctcaaacacttt |
350 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||| || |||| |||||| ||| ||||||| ||||||||||||||||||| || |||| |
|
|
| T |
4102417 |
cttctacaccctcccaaattcacaatcacacccttcttacttttttgaaaaccttgttccaaaactcaaatattcactctctttaaccctccaaaacttc |
4102516 |
T |
|
| Q |
351 |
ctccctttagctggtaagataatttggcctt |
381 |
Q |
| |
|
||||||||||||||||| || ||||||||| |
|
|
| T |
4102517 |
ctccctttagctggtaacatcgtttggcctt |
4102547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 232 - 382
Target Start/End: Original strand, 4121875 - 4122025
Alignment:
| Q |
232 |
atccagtggaacgtgttttcttctacaccctcccaagttcacaatcacacccttctttcttcttccaaaagcttgttacaattctcaaatcttcactctc |
331 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||||| |||||||||||||||||||||||| | |||| |||||| ||| ||||||||||||||||| |
|
|
| T |
4121875 |
atccagttgaacgtatcttcttctacaccctcccaaattcacaatcacacccttctttctttgttgaaaaccttgttccaaaactcaaatcttcactctc |
4121974 |
T |
|
| Q |
332 |
tttaaccctcaaacactttctccctttagctggtaagataatttggccttc |
382 |
Q |
| |
|
|||||||||| || | || | |||||||||||||| || |||||||||| |
|
|
| T |
4121975 |
tttaaccctccaaaaattcccacctttagctggtaacatcgtttggccttc |
4122025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 4191425 - 4191510
Alignment:
| Q |
54 |
tttcttctaatcattcaaagctattaaattttaatcaaacaacacttcctttatctcgtatggctttcaacaacaacaatatcaaaa |
140 |
Q |
| |
|
|||||||||||||||||||||| |||||| | |||||||||||||| |||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
4191425 |
tttcttctaatcattcaaagcttagaaatttaattcaaacaacacttc-tttatctcatatggctttcaacaacaaaaatatcaaaa |
4191510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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