View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_15 (Length: 451)
Name: NF7711_low_15
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 105 - 437
Target Start/End: Original strand, 31692125 - 31692473
Alignment:
| Q |
105 |
tttgtttgcattaactttgtaaaatcgtgaacatagatttgttgattgcacaaaaataatgtcatcaacatgaatttggacgagtataaagtgttcatca |
204 |
Q |
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| T |
31692125 |
tttgtttgcattaactttgtaaaatcgtgaacatagatttgttgattggacaaaaataatgtcatcaacatgaatttggacaagtataaagtgttcatca |
31692224 |
T |
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| Q |
205 |
taatattcgcgatgaaatcgcaaactaaaaggttgatcgaacaaggagaataacatgaaggaa----------------tcacaaacaaatttgcgtaat |
288 |
Q |
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| T |
31692225 |
taatattcccgatgaaatcgcaaactgaaaggttgatcgaacaaggaggataacatgaaggaaacaaatagaagcggaatcacaaacaaatttgcgaaat |
31692324 |
T |
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| Q |
289 |
agaaccgcaagatgtagtagcttaagaaactgaaatacaattgaattttgaataacaaaccctagaatttgggaaaggatggaatgaaattgcgatgaaa |
388 |
Q |
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| T |
31692325 |
agaaccgcaagatgtagtggcttaagaaactgaaatacaattgaattttgaataacaaaccctagaatttgggaaaggatggaatgaaattgcgatgaaa |
31692424 |
T |
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| Q |
389 |
acttaatcacaaacagaaaaacgaaataggaattgatcgaaagatgatg |
437 |
Q |
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| T |
31692425 |
acttgatcacaaacagaaaaacgaaataggaattgatcgaaagatgatg |
31692473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 31692067 - 31692126
Alignment:
| Q |
17 |
aacatgagcatatttactcgggtaaacgatgcaacatttgaattatcttaggaagaactt |
76 |
Q |
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| T |
31692067 |
aacatgagcatatttactcgggtaaacgatgcaacatttgaattatcttaggaagaactt |
31692126 |
T |
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