View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_17 (Length: 440)
Name: NF7711_low_17
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_17 |
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| [»] scaffold0536 (1 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 586 - 147
Alignment:
| Q |
1 |
aatgtcacaaagagggatcatgtgacctgctgctagatatggaatgaagtaaagtttgagtggtttgtccattgttgtggatgagacactgtcttctgcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
586 |
aatgtcacaaagagggatcatgtgacctgctgctagatatggaatgaagtaaagtttgagtggtttgtccattgttgtggatgagacactgtcttctgcc |
487 |
T |
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| Q |
101 |
tttgcaaacaagttcatgtcttttttataaggataatggaaactttgataagccaaagcatgatgcggacactactttgaaagaatcagccctgtttttg |
200 |
Q |
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| T |
486 |
tttgcaaacaagttcatgtcttttttataagaataatggaagctttgataagccaaagcatgatgcggacgctactttgaaagaatcagccctg-ttttg |
388 |
T |
|
| Q |
201 |
gtatcaacaagccggcttctagttaaattttttgatggtacgtttagataaataaatagataatatacacatgatacctcctcccaaataa-------tt |
293 |
Q |
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| T |
387 |
gtatcaacaagccggcttctagttaaattttttgatggtacgtttagataaataaatagataatatacacatgatacctcctcccaaataattcattttt |
288 |
T |
|
| Q |
294 |
actacaagtgatatttcttc-------------ccatataagttgtattgactattgttcaccgcaagttaattactacaaaaacgttgaatttatctct |
380 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
287 |
acta-aagtgatatttcttcccatttaaaatcaccatataagttgtattgactattgttcaccgcaagttaattactacaaaaacgttgaatttatctct |
189 |
T |
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| Q |
381 |
ttcctgtgacacttaannnnnnnnagaggaaacgaatctttt |
422 |
Q |
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| T |
188 |
ttcctgtgacacttaattttttttagaggaaacgaatctttt |
147 |
T |
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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 48952293 - 48952382
Alignment:
| Q |
2 |
atgtcacaaagagggatcatgtgacctgctgctagatatggaatgaagtaaagtttgagtggtttgtccattgttgtggatgagacactg |
91 |
Q |
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| T |
48952293 |
atgtcacataaagggatcatgtgccctgctgctaagtatggaatgaagtaaagtttgagtggtttatccattgttgtggctgagacactg |
48952382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 48966421 - 48966483
Alignment:
| Q |
2 |
atgtcacaaagagggatcatgtgacctgctgctagatatggaatgaagtaaagtttgagtggt |
64 |
Q |
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| T |
48966421 |
atgtcacacatagggatcatatggcctggtgctagatatggaatgaagtgaagtttcagtggt |
48966483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 13441292 - 13441354
Alignment:
| Q |
2 |
atgtcacaaagagggatcatgtgacctgctgctagatatggaatgaagtaaagtttgagtggt |
64 |
Q |
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| T |
13441292 |
atgtcacaaagagggatcatatgtccagatgctagatatggaatgaagtgaattttcagtggt |
13441354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 13462476 - 13462539
Alignment:
| Q |
2 |
atgtcacaaagagggatcatgtgacctgctgctagatatggaatgaagtaaagtttgagtggtt |
65 |
Q |
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|||||| ||||||||||||| || || | |||||||||||||||||||| ||||| ||||||| |
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| T |
13462476 |
atgtcaaaaagagggatcatatgtccagatgctagatatggaatgaagtgcagtttcagtggtt |
13462539 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 12589281 - 12589225
Alignment:
| Q |
1 |
aatgtcacaaagagggatcatgtgacctgctgctagatatggaatgaagtaaagttt |
57 |
Q |
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||||||||| ||||||||||| || || | || ||||||||||||||||| |||||| |
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| T |
12589281 |
aatgtcacatagagggatcatatgcccaggtgatagatatggaatgaagtgaagttt |
12589225 |
T |
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