View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_18 (Length: 429)
Name: NF7711_low_18
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 6434859 - 6435268
Alignment:
| Q |
18 |
tttataacagtctcgaacttaaaaatatattattgatacacattcatttatcacatgagcaaacaaaaaatatggaagatttttctannnnnnncttatt |
117 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6434859 |
tttataacactctcaaacttaaaaatatattattgatacacattcatttatcacatgagcaaacaaaaaatatggaagatttttctatttttttcttatt |
6434958 |
T |
|
| Q |
118 |
atcattccttcgacgcctttccttctcctaactcataagtagagccttcttatcctgtcgtggagcgaacaaaataaccttggtaatagcggaggggata |
217 |
Q |
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||| | || || |||||||||||||| |||||||| ||||| | ||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
6434959 |
atcctcccctcaacgcctttccttcttctaactcacaagtaaaaccttcttatcctgccgtggaacgaacaagataaccttggtaatagcggaggggata |
6435058 |
T |
|
| Q |
218 |
tatgataaactnnnnnnnnttattctatttcatagaaataacttaatttgatacaaaacattatctagataatttctcatatagcaagtcattttccatg |
317 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6435059 |
tatgataaactaaaaaaaattattatatttcatagaaataacttaatttgatacaaaacattatctagataatttctcatatagcaagtcattttccatg |
6435158 |
T |
|
| Q |
318 |
ttatcaat-aagttacacaatttctcatatagcaaatcattttccatgttatcaattaagttacacctacgtatctcactcctcattctaaaaatgcagc |
416 |
Q |
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|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6435159 |
ttatcaattaagttgcacaatttctcatatagcaagtcattttccatgttatcaattaagttacacctacgtatctcactcctcattctaaaaatgcagc |
6435258 |
T |
|
| Q |
417 |
tccaattgca |
426 |
Q |
| |
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|||||||||| |
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| T |
6435259 |
tccaattgca |
6435268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 29429775 - 29430092
Alignment:
| Q |
18 |
tttataacagtctcgaacttaaaaatatattattgatacacattcatttatcacatgagcaaacaaaaaatatggaagatttttctannnnnnncttatt |
117 |
Q |
| |
|
||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| |
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| T |
29429775 |
tttataacactctcaaacttaaaaatatagtattgatacacattcatttatcacatgagcaaacaaaaaatatgaaagatatttctatttttt-cttatt |
29429873 |
T |
|
| Q |
118 |
atcattccttcgacgcctttccttctcctaactcataagtagagccttcttatcctgtcgtggagcgaacaaaataaccttggtaatagcggaggggata |
217 |
Q |
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||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
29429874 |
atccttccttcaacgcctttccttctcctaactcacaagtagagccttcttatcctgtcgtggagcgaacaagataaccttgataatagcggaggggatt |
29429973 |
T |
|
| Q |
218 |
tatgataaactnnnnnnnnttattctatttcatagaaataacttaatttgatacaaaacattatctagataatttctcatatagcaagtcattttccatg |
317 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29429974 |
tatgataaaccaaaaaaaattattctatttcatagaaataacttaatttgatacaaaatattatctagataatttctcatttagcaagtcattttccatg |
29430073 |
T |
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| Q |
318 |
ttatcaa-taagttacaca |
335 |
Q |
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||||||| ||||||||||| |
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| T |
29430074 |
ttatcaattaagttacaca |
29430092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 335 - 423
Target Start/End: Original strand, 29430044 - 29430132
Alignment:
| Q |
335 |
aatttctcatatagcaaatcattttccatgttatcaattaagttacacctacgtatctcactcctcattctaaaaatgcagctccaatt |
423 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| |
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| T |
29430044 |
aatttctcatttagcaagtcattttccatgttatcaattaagttacacatacgtatctcactcttcattctaaaaatgtagctccaatt |
29430132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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